GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001460-TA|BGIBMGA001460-PA|IPR002112|Transcription
factor Jun, IPR004827|Basic-leucine zipper (bZIP) transcription
factor, IPR008917|Eukaryotic transcription factor, DNA-binding,
IPR011616|bZIP transcription factor, bZIP_1
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    25   1.00 
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    22   7.0  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 25.0 bits (52), Expect = 1.00
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 51  NDLKESRNEYEYEHNNNC 68
           N    + N Y+Y +NNNC
Sbjct: 87  NKTIHNNNNYKYNYNNNC 104


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 256 KKRMKKLEFDYEDGRDYLTPVVKEENYGSYKIEAKIKPDLTEDFLTNTLLS 306
           +KR  KL    E+  +       E  Y + +  AK++P L E F T  +L+
Sbjct: 123 RKRGAKLTEAEEEVLNKKRSKKAEAKYKARQRFAKVEPALEEQFATGRVLA 173


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.133    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,184
Number of Sequences: 429
Number of extensions: 3902
Number of successful extensions: 16
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 2
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)