GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001459-TA|BGIBMGA001459-PA|undefined
         (51 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   1.6  
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...    23   6.5  

>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 9/22 (40%), Positives = 14/22 (63%)

Query: 25  LHHMAFTNGNTTRNKLLQEIKA 46
           +HH  F  G+T R + LQ++ A
Sbjct: 860 VHHFGFAPGSTPRREWLQKLDA 881


>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 18  VAQFDCRLHHMAFTNGNTTRNKLLQEIKASANLK 51
           +  F  +L     T  N TR     + +ASANL+
Sbjct: 215 IEDFTSKLPSALITRNNLTRTSWFVDDEASANLE 248


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,350
Number of Sequences: 5004
Number of extensions: 5829
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 51
length of database: 2,362,478
effective HSP length: 32
effective length of query: 19
effective length of database: 2,202,350
effective search space: 41844650
effective search space used: 41844650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)