GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001459-TA|BGIBMGA001459-PA|undefined
         (51 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0627 - 20061951-20062391,20062912-20062960,20063386-200638...    25   5.7  
02_05_1064 - 33842970-33843344,33843596-33843641,33844124-338441...    25   5.7  
01_01_0585 - 4328725-4329030,4329333-4329551,4329752-4329820,432...    25   5.7  

>07_03_0627 - 20061951-20062391,20062912-20062960,20063386-20063851,
            20063933-20064139,20064267-20064405,20065146-20065282,
            20065414-20065657,20065808-20065969,20066049-20066167,
            20066240-20066314,20066327-20066500,20066607-20066769,
            20067211-20067420,20067515-20067668,20067761-20067839,
            20067999-20068146,20068501-20068671,20068771-20069385
          Length = 1250

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 17   HVAQFDCRLHHMAFTNGNTTRNKLLQEIKASANLK 51
            ++AQF C L+   F  G T    L Q +++   LK
Sbjct: 1207 YMAQFICLLYDKLFREGVTVDTALQQALRSHPKLK 1241


>02_05_1064 -
           33842970-33843344,33843596-33843641,33844124-33844176,
           33844255-33844512,33845245-33845430,33845862-33845903,
           33846598-33846741
          Length = 367

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)

Query: 16  AHVAQFDCRLHHMAFTNGNTTRNKLLQEI 44
           AH++ FDC +  +   + N   N +LQ I
Sbjct: 85  AHLSTFDCPIGTIPILHNNNMDNTILQRI 113


>01_01_0585 -
           4328725-4329030,4329333-4329551,4329752-4329820,
           4329925-4331469,4332220-4332429,4332563-4332713,
           4332791-4333031,4333898-4333956,4334379-4334653,
           4334813-4334955,4335034-4335088,4335181-4335258,
           4335351-4335478,4335533-4335575
          Length = 1173

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 12  SYVLAHVAQFDCRLHHMAFTNGNTTRNKLLQEIK 45
           SYVLA V    C L    F + N   + L   IK
Sbjct: 685 SYVLAAVCALSCELQLFPFISKNGNHSNLKDSIK 718


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,320,448
Number of Sequences: 37544
Number of extensions: 32680
Number of successful extensions: 49
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 14,793,348
effective HSP length: 32
effective length of query: 19
effective length of database: 13,591,940
effective search space: 258246860
effective search space used: 258246860
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)