GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001459-TA|BGIBMGA001459-PA|undefined
         (51 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.6  
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)                    25   6.6  
SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)                   25   8.7  

>SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)

Query: 3   DLSHEEIVTSYVLAHVAQFDCRLHH 27
           D+S++E+ +  +L  V +FDC   H
Sbjct: 261 DISYDELQSQKLLFQVMEFDCLSRH 285


>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1774

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 10  VTSYVLAHVAQFDCRLHHMAFTNGNTTRN 38
           VTS ++ H  + +C L  +A  NG+ T +
Sbjct: 610 VTSIIVKHTEESNCTLELIASINGDVTNS 638


>SB_154| Best HMM Match : RVT_1 (HMM E-Value=0.00044)
          Length = 1170

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 3   DLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNTTRNKLLQEIKAS 47
           DLS  +I+   ++A+V +    L     T G   + ++L + +AS
Sbjct: 327 DLSKAKILRKIIMANVEELAATLSQKVLTEGLQKQQQVLADTQAS 371


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,626,195
Number of Sequences: 59808
Number of extensions: 40520
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 16,821,457
effective HSP length: 31
effective length of query: 20
effective length of database: 14,967,409
effective search space: 299348180
effective search space used: 299348180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)