GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001459-TA|BGIBMGA001459-PA|undefined
         (51 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46676-1|CAA86661.1|  799|Caenorhabditis elegans Hypothetical pr...    27   2.1  
X16473-1|CAA34493.1|  799|Caenorhabditis elegans zyg-11 protein ...    27   2.1  
L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine aminope...    25   8.5  

>Z46676-1|CAA86661.1|  799|Caenorhabditis elegans Hypothetical
           protein C08B11.1 protein.
          Length = 799

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 3   DLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNTTRNKLLQEIKAS 47
           DLS    +TS    +VA+   RL  +AF N  +T N+ L +I AS
Sbjct: 138 DLSGRHRITSNWPTYVARKLPRLESLAFAN-RSTANETLSQIGAS 181


>X16473-1|CAA34493.1|  799|Caenorhabditis elegans zyg-11 protein
           protein.
          Length = 799

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 3   DLSHEEIVTSYVLAHVAQFDCRLHHMAFTNGNTTRNKLLQEIKAS 47
           DLS    +TS    +VA+   RL  +AF N  +T N+ L +I AS
Sbjct: 138 DLSGRHRITSNWPTYVARKLPRLESLAFAN-RSTANETLSQIGAS 181


>L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine
           aminopeptidase protein 1 protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 24  RLHHMAFTNGNTTRNKLLQEIKASANL 50
           RLH  A TN     N++++  KAS +L
Sbjct: 373 RLHGAAMTNDEQLENEIIKAGKASGDL 399


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.128    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,200,208
Number of Sequences: 27539
Number of extensions: 31161
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66
Number of HSP's gapped (non-prelim): 3
length of query: 51
length of database: 12,573,161
effective HSP length: 32
effective length of query: 19
effective length of database: 11,691,913
effective search space: 222146347
effective search space used: 222146347
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)