GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001458-TA|BGIBMGA001458-PA|IPR002290|Serine/threonine
protein kinase, IPR000719|Protein kinase, IPR008271|Serine/threonine
protein kinase, active site, IPR011009|Protein kinase-like
         (403 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    49   7e-08
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          24   2.2  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           24   2.2  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    23   5.1  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   6.8  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 48.8 bits (111), Expect = 7e-08
 Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 6/99 (6%)

Query: 184 PESILGTITSAVLKGLSYLRDKHAIMHRDVKPSNILVNSNGEIKICDFGVSGQLI-DSMA 242
           P+ +L +I   V  G+ +L  K  ++HRD+   N+LV  N  +K+ DFG+S  +  D++ 
Sbjct: 591 PKHLL-SIARQVALGMEHLA-KTRVVHRDLAARNVLVCENHTVKVSDFGLSRDVYQDNVY 648

Query: 243 NSFVGTR---SYMSPERLQGTHYSVQSDIWSLGLSLVEM 278
               G +    +M+ E L    Y+  SD+WS G+ L E+
Sbjct: 649 CKNGGGKLPVRWMALESLTHQRYTTYSDVWSFGVLLWEI 687


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 3   KMSKNKLNLTLPPGSIDTNPAATPSNMTPQLKSATAN 39
           K  K ++N    P S   +PA T S+++PQ  ++TA+
Sbjct: 142 KHKKEQMNKVSTPRS---SPAETASSLSPQSVASTAS 175


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 3   KMSKNKLNLTLPPGSIDTNPAATPSNMTPQLKSATAN 39
           K  K ++N    P S   +PA T S+++PQ  ++TA+
Sbjct: 133 KHKKEQMNKVSTPRS---SPAETASSLSPQSVASTAS 166


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 301 NEDHSPGQAPNSPRPMAIFELLDYIVN 327
           N   +P    N PR   I E+L  I+N
Sbjct: 23  NAQDAPAGGENEPRKQDIGEILQQIMN 49


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 160 EISICMEYMDGGSLDLIL 177
           ++S C  Y+DGG  ++IL
Sbjct: 245 KLSHCNSYVDGGRNEIIL 262


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.134    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,420
Number of Sequences: 317
Number of extensions: 4445
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 403
length of database: 114,650
effective HSP length: 58
effective length of query: 345
effective length of database: 96,264
effective search space: 33211080
effective search space used: 33211080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 44 (21.8 bits)