GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001457-TA|BGIBMGA001457-PA|undefined
         (636 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    28   0.17 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   3.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    24   3.7  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    24   3.7  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    24   3.7  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    23   8.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   8.5  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   8.5  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 28.3 bits (60), Expect = 0.17
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 112 RKQIKKKNS-TDLPKNDQNDTDEK--SDEDKMNVDEPVDSPEKNVDMTILSNSTSRVTDN 168
           R+++KK+N  T  PKN  +D D+   SD D    DE     + ++   I S    +  D+
Sbjct: 139 RRRLKKENKMTWEPKNKTDDDDDALVSDSDDREKDEEDKRDDTDMHGRIKSERNGKDLDD 198

Query: 169 EIVILEDSSD 178
           + +  +D  D
Sbjct: 199 DDMNDDDRKD 208



 Score = 24.6 bits (51), Expect = 2.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 117 KKNSTDLPKNDQNDTDEKSD 136
           ++N  DL  +D ND D K D
Sbjct: 190 ERNGKDLDDDDMNDDDRKDD 209


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 121 TDLPKNDQNDTDEKSDEDKMNVDEPVDSPEKNVDMTILSNSTSRVTDNEI 170
           T  P +   ++ EK  E+K + ++P  S    + M I ++   R+T N I
Sbjct: 60  TPPPLDCSKNSPEKESEEKKSKEKPPYSYNALIMMAIRNSPEKRLTLNGI 109


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 141 NVDEPVDSPEKNVDMTILSNSTSRVTDN---EIVILEDSSDQFDTKMKLEADIEPKANGR 197
           N +    +   N +    SN  S V  +   + +I EDS    DT +     I  KAN  
Sbjct: 127 NNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKANSV 186

Query: 198 KSPRESKSNKIEQIEKSAEYQK 219
               E++ N     EK     K
Sbjct: 187 SVKVENRRNSPNSCEKKIGLSK 208


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 141 NVDEPVDSPEKNVDMTILSNSTSRVTDN---EIVILEDSSDQFDTKMKLEADIEPKANGR 197
           N +    +   N +    SN  S V  +   + +I EDS    DT +     I  KAN  
Sbjct: 75  NNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKANSV 134

Query: 198 KSPRESKSNKIEQIEKSAEYQK 219
               E++ N     EK     K
Sbjct: 135 SVKVENRRNSPNSCEKKIGLSK 156


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 141 NVDEPVDSPEKNVDMTILSNSTSRVTDN---EIVILEDSSDQFDTKMKLEADIEPKANGR 197
           N +    +   N +    SN  S V  +   + +I EDS    DT +     I  KAN  
Sbjct: 258 NNNNTPSATNNNTNFNNNSNGASSVGSSSPFDKLIEEDSRSNEDTSLHPSPRITKKANSV 317

Query: 198 KSPRESKSNKIEQIEKSAEYQK 219
               E++ N     EK     K
Sbjct: 318 SVKVENRRNSPNSCEKKIGLSK 339


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 95  KLVDVAWKKKQKLNSAKR----KQIKKKNSTDLPKNDQNDTDEKSDEDKMNVDEPVDSPE 150
           KLV    K    LN A +     + K+   +  P  D N    + D+   +++  V+   
Sbjct: 50  KLVTFILKNPPNLNPAVQGSSLTEGKRSKRSKRPNGDTNGDTSQVDDQNESLEASVNENS 109

Query: 151 KNVD 154
           KN D
Sbjct: 110 KNGD 113


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 368  EDELPPIDAEDEIVACDQAPREKLRPKLLS 397
            ++ +PPID E   V   +  RE+  P + S
Sbjct: 1772 QETIPPIDEEPPSVEAVEEEREEAPPSVHS 1801


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 8.5
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 133 EKSDEDKMNVDEPVDSPEKNVDMTIL 158
           E SD+D    D  V   EKN D+ IL
Sbjct: 568 EASDKDPEMYDRVVALREKNPDLKIL 593


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.308    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,810
Number of Sequences: 317
Number of extensions: 4728
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 9
length of query: 636
length of database: 114,650
effective HSP length: 61
effective length of query: 575
effective length of database: 95,313
effective search space: 54804975
effective search space used: 54804975
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 46 (22.6 bits)