GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001457-TA|BGIBMGA001457-PA|undefined
         (636 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   4.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   7.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 4.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 291 KNNMLSSFTLKLDMRLAPTTRAE 313
           KN +  + T+KLD R   +TR E
Sbjct: 71  KNELERNITIKLDTRAEDSTRGE 93


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 7.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 450 DGSAVGSDDEQDGDEYEVDNE 470
           +G AVG  DE D D+ + D++
Sbjct: 382 NGEAVGEVDEDDDDDGDDDDD 402


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.308    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,878
Number of Sequences: 429
Number of extensions: 6535
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 2
length of query: 636
length of database: 140,377
effective HSP length: 62
effective length of query: 574
effective length of database: 113,779
effective search space: 65309146
effective search space used: 65309146
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 47 (23.0 bits)