GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001456-TA|BGIBMGA001456-PA|IPR008991|Translation protein
SH3-like
         (420 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    26   0.58 
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   7.1  
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    22   7.1  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   7.1  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    22   7.1  

>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
          protein 17 protein.
          Length = 124

 Score = 25.8 bits (54), Expect = 0.58
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 25 KDYIECVEEKSIKVVGAEEIKDDTP 49
          K+Y++C+ EK       EE+K D P
Sbjct: 40 KNYLDCILEKGKCTPEGEELKKDIP 64


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
          protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 25 KDYIECVEEKSIKVVGAEEIKDDTP 49
          ++Y++CV  K       EE+K D P
Sbjct: 41 RNYLDCVLGKGKCTPEGEELKKDIP 65


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
          protein 14 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 25 KDYIECVEEKSIKVVGAEEIKDDTP 49
          ++YI+C+  K       EE+K D P
Sbjct: 41 RNYIDCILGKGKCTPEGEELKRDIP 65


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
          protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 25 KDYIECVEEKSIKVVGAEEIKDDTP 49
          ++Y++CV  K       EE+K D P
Sbjct: 41 RNYLDCVLGKGKCTPEGEELKKDIP 65


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 22.2 bits (45), Expect = 7.1
 Identities = 9/29 (31%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 20  VVDEKKDYIECVEEKSIKVVGAEEIKDDT 48
           V + +K +IEC+E+ ++ ++   +I  DT
Sbjct: 221 VAESRKIFIECIEQYNV-ILRYTKIVSDT 248


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.306    0.127    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,260
Number of Sequences: 317
Number of extensions: 2979
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 5
length of query: 420
length of database: 114,650
effective HSP length: 59
effective length of query: 361
effective length of database: 95,947
effective search space: 34636867
effective search space used: 34636867
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 44 (21.8 bits)