Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001456-TA|BGIBMGA001456-PA|IPR008991|Translation protein
SH3-like
(420 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 49 1e-06
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 35 0.025
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 32 0.13
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 32 0.17
SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7 |S... 31 0.23
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 30 0.53
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 30 0.70
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 29 0.92
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 29 0.92
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 29 1.2
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 29 1.2
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 29 1.6
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 28 2.8
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 28 2.8
SPCC1827.02c |||cholinephosphate cytidylyltransferase |Schizosac... 28 2.8
SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c... 27 3.7
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 3.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 27 3.7
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 3.7
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 27 3.7
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 27 4.9
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 4.9
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 27 4.9
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 27 4.9
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 27 6.5
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|... 27 6.5
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 8.6
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 26 8.6
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 26 8.6
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 48.8 bits (111), Expect = 1e-06
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 6/90 (6%)
Query: 100 QMAVRELMEDTKKKVNIETSAITVPLP------AKPVTDGEKESTLDDYDSVPIQDFGMA 153
Q+ + +L +D K + IT + K + + + S + DY +P+++FG A
Sbjct: 140 QLVLNDLNDDVKSANSANLQPITTNVVNEKDAYRKDIDELPEPSNMKDYSEIPVEEFGAA 199
Query: 154 MLRGMGWTPNKDLPKYKQPQLRPKGLGLGA 183
MLRGMGW RP LG+GA
Sbjct: 200 MLRGMGWNGQLSSKDAFDVNQRPTFLGMGA 229
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 34.7 bits (76), Expect = 0.025
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 258 SEFDKESKVINAXXXXXXXXXXXVPQSSKEKDIESSPKRETKKEKYEHTDRREREDWSNG 317
+E K + V+ V S K K +ESS K E + K E RR++E
Sbjct: 399 AEVAKPAPVVAPAAPTVEAEVNGVEDSKKRKSVESSEKDEDEAAKKEEK-RRKKEAKKEK 457
Query: 318 KNRKEDRHRRDSSSTGE 334
K +KE + +++ E
Sbjct: 458 KEKKEKKEKKEKKKKSE 474
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 32.3 bits (70), Expect = 0.13
Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 22 DEKKDYIECVEEKSIKVVGAEEIKDDTPLIIPMKP----NTLITTERLKQIAQKVESALD 77
D + D ++ EEK V + K+D P + P P ++ + E L Q+ + ++S D
Sbjct: 587 DAEGDIVQNEEEKESVEVEEGKHKNDLPKVSPKPPTEGVDSEVNGESLVQVNKVLKSEDD 646
Query: 78 EPEVVKSDSPKTVEIPEN-ETLEQMAVR-ELMEDTKKKVNIETS 119
D V+ PEN E L+Q E+ E+ +N + S
Sbjct: 647 NTSEASKDPSSHVKSPENIEKLKQNDDHFEVTEEITSTINSKIS 690
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/78 (21%), Positives = 37/78 (47%)
Query: 72 VESALDEPEVVKSDSPKTVEIPENETLEQMAVRELMEDTKKKVNIETSAITVPLPAKPVT 131
VE + E + S T IP + + EL+E+ KK+ N++ ++ P +
Sbjct: 529 VELLCNSIEGKPTTSKITPSIPPAFDIHIIEGEELLEEMKKRENVKHNSQNFASPMQTDA 588
Query: 132 DGEKESTLDDYDSVPIQD 149
+G+ ++ +SV +++
Sbjct: 589 EGDIVQNEEEKESVEVEE 606
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 31.9 bits (69), Expect = 0.17
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 15/123 (12%)
Query: 6 ISFGFMKTKKAEKPVVDEKKDYIECVEEKS-IKVVGAEEIKDDTPLIIPMKPNTLITTER 64
I G KT+ PV DEK + + E S V+ D P++ +PN L +
Sbjct: 675 IDRGVTKTRDVSSPVSDEKSENVNHEEANSGHTVMNVHSSLDPQPIV---QPNELESGSY 731
Query: 65 LKQI-------AQKV---ESALDEPEVVKSDSPKTVEIPENETLEQMAVRELMEDTKKKV 114
LK + ++KV E ++ P+ ++S + +TVE ET +++ +E + +
Sbjct: 732 LKDLPDRNVGNSEKVTFQEDDINSPK-LQSKNNQTVEAVNTETSDKLQEKEANHELENIE 790
Query: 115 NIE 117
IE
Sbjct: 791 KIE 793
>SPBC16A3.19 |||histone acetyltransferase complex subunit Eaf7
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 272
Score = 31.5 bits (68), Expect = 0.23
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 10/132 (7%)
Query: 5 KISFGFMKTK-KAEKPVVDEKKDYIECVEEKSIKVVGAEEIKDDTPLIIPMKPNTLITTE 63
K+ +K K K+EKP+ +K IE VE K G E+K +T L K + +
Sbjct: 121 KLPKDILKVKEKSEKPLETSQKVEIETVETKP----GEPEVKQETNLQKEKKESKVKLES 176
Query: 64 RLKQIAQKVESALD--EPEVVKSDSPKTVE-IPENETLEQMAVRELMEDTKKKVNIETSA 120
+ ++I++ + S+ P + SPK IPE + E+ +E +K+ +S
Sbjct: 177 KEEKISRNLRSSSRSISPVTEQPQSPKIQPVIPEKK--EKSEKKESSMTLRKRSVSPSSQ 234
Query: 121 ITVPLPAKPVTD 132
T P + T+
Sbjct: 235 NTARSPKRMATE 246
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 30.3 bits (65), Expect = 0.53
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 283 QSSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNR-KEDRHR-RDSSSTG 333
+S++++ E S + +K EH+ R R D +N + R DR+R RD +G
Sbjct: 178 RSNQDRSRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDRYRHRDKYDSG 230
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 29.9 bits (64), Expect = 0.70
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 281 VPQSSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNR--KED--RHRRDSSSTGEE 335
V + + D E+S KR+ KK K+EH + +++ S K+R K+D + ++ S T EE
Sbjct: 55 VEELKRSADEEASVKRKEKKSKHEH-KKHKKDKPSADKDRISKKDKKKSKKGKSKTKEE 112
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.92
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 51 IIPMKPNTLITTERLKQIAQKVESA--LDEPEVVKSDSPKTVEI 92
I+ KP IT + +Q+A K+ESA P+V + DS V I
Sbjct: 364 IVTKKPEPCITVKEEEQLAPKIESADLSITPQVTEHDSKPPVRI 407
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 29.5 bits (63), Expect = 0.92
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 283 QSSKEKDIESSPKRETK-KEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERSQ 338
+ +++ E KRE + K K E ++ +RE N K E++ +R++ + ++
Sbjct: 630 EEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAE 686
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 283 QSSKEKDIESSPKRETK-KEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERSQ 338
+ +++ E KRE + K K E ++ +RE N K E++ +R++ + ++
Sbjct: 566 EEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAE 622
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 283 QSSKEKDIESSPKRETKKE-KYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERS 337
+ + +++ E KRE ++ K E ++ +RE N K + E+ +R++ E +S
Sbjct: 662 EENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADKNPEIKS 717
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/57 (21%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 283 QSSKEKDIESSPKRETKKE-KYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERSQ 338
+ +++ E KRE ++ K E ++ +RE N K E++ +R++ + +++
Sbjct: 646 EEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAE 702
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 29.1 bits (62), Expect = 1.2
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 10 FMKTKKAEKPVVDE-----KKDYIECVEEKSIKVVGAEEIKDDTPLIIPMKPNTLITTER 64
F ++K KPV E KKD +E VEE + AE I+ DT + +KP + ++
Sbjct: 33 FSQSKPIPKPVAKETTVLTKKD-VE-VEEANGVEEAAETIESDTKEVQNIKPKSKKKKKK 90
Query: 65 LKQIAQKVESALDEPEVVKSDSPK 88
L + +E E + + D K
Sbjct: 91 LNDSSDDIEGKYFEELLAEEDEEK 114
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 46 DDTPLIIPMKPNTLITTERLKQIAQKVESALDEPEVVKSDSPKTVEIPE 94
++ P+ P KPNTL E+ Q + ++L E+ + PK++++PE
Sbjct: 352 ENAPVSKPSKPNTLTEDEKPLQSTKLPGNSLTVGELYQ--EPKSIQLPE 398
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 28.7 bits (61), Expect = 1.6
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 13 TKKAEKPVVDEKKDYIECVEEKSIKVVGAEEIKDDTPLIIPMKPNTLITTERLKQIAQK 71
+K +K E+++Y+E V+EKS+K E D+ ++P + T I+ R + + K
Sbjct: 163 SKATKKVKQKEEEEYVEEVDEKSLK---NESSSDEFEPVVPEQLETPISKRRRSRSSAK 218
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.9 bits (59), Expect = 2.8
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 289 DIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEE 335
DIESS K + KK+K + D ++D K KE++ R+ +S E
Sbjct: 170 DIESSEKDKKKKKKSKENDDAPKKDRKTRK--KEEKARKLASMLESE 214
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Query: 61 TTERLKQIAQKVESALDEPEVVKSDSPKTVEIPENETLEQMAVRELMEDTKKKVNIE 117
T +R K + ++V ++ E ++ VEI E+LE + E +DT +E
Sbjct: 120 TIDRKKSLERRVRE--EQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTSSLATLE 174
>SPCC1827.02c |||cholinephosphate cytidylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 354
Score = 27.9 bits (59), Expect = 2.8
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 281 VPQSSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERSQ 338
V S KE ++E R+TKK +E + E+E K+ KED S + EE SQ
Sbjct: 11 VEPSEKEDNVE----RQTKKYNFEIDEPEEQEK----KDEKEDDKEESPSKSLEEISQ 60
>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 436
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 80 EVVKSDSPKTVEIPENETLEQMAVRELMEDTKKKVNIETSAITVPLPAKPVTDGEKESTL 139
E S S + + ENET+ + E+ ED + NI+ + + P P + E E
Sbjct: 7 ENTSSTSLSSFYVLENETIFNVQ-EEMEEDGSESGNIQKTLLEDPCPENVNDENEDEQNR 65
Query: 140 DDYDSVPI 147
S P+
Sbjct: 66 SSRSSSPL 73
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 283 QSSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRK---EDRHRRDSSSTG 333
+SSK + + +++ KK+K + +R + D S+ + RK D+ + SS +G
Sbjct: 137 ESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSG 190
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 27.5 bits (58), Expect = 3.7
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 50 LIIPMKPNTLITTERLKQIAQKVESALDEPEV-VKSDSPKTVEIPENETLEQMAVRELME 108
L IP P + TE +Q +E LDEPE+ V SD+P +++ E+ ++ + + ++
Sbjct: 209 LPIPSSPPAALETEENVD-SQPME--LDEPELPVGSDAP-IIDVEESIAMKPLMSHDQVD 264
Query: 109 DT 110
DT
Sbjct: 265 DT 266
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 283 QSSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERS 337
+S KE SSP+ K K + +++ E S ++ SSS E S
Sbjct: 53 KSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESESSSSESESSS 107
Score = 27.1 bits (57), Expect = 4.9
Identities = 29/127 (22%), Positives = 46/127 (36%), Gaps = 6/127 (4%)
Query: 210 VKITTGKYSGYYGKVLSLDEDNGRAMVNIVMKNETVNLSEFMMHPVTKSEFDKESKVINA 269
VK K S S E+ A+V I K E+ + S + SE + ES ++
Sbjct: 128 VKTEEKKESSSESSSSSESEEEEEAVVKIEEKKESSSDSS---SESSSSESESES---SS 181
Query: 270 XXXXXXXXXXXVPQSSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDS 329
+ KE ESS E+ + + + S ++ ED +R +
Sbjct: 182 SESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKA 241
Query: 330 SSTGEER 336
EER
Sbjct: 242 EPASEER 248
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 27.5 bits (58), Expect = 3.7
Identities = 22/93 (23%), Positives = 35/93 (37%)
Query: 54 MKPNTLITTERLKQIAQKVESALDEPEVVKSDSPKTVEIPENETLEQMAVRELMEDTKKK 113
++ N I A V S L E K + PK + TL+ + +T
Sbjct: 57 LEKNLSIPKSATATTASAVSSELASYEKPKKEHPKLRPSKKKATLDDWDIPTSSTETDTI 116
Query: 114 VNIETSAITVPLPAKPVTDGEKESTLDDYDSVP 146
TS I L + + KE+T + +S+P
Sbjct: 117 STTHTSYIPTLLAKQEENEETKETTTNKNESLP 149
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 27.1 bits (57), Expect = 4.9
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 281 VPQSSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSS 331
+P+ E+ E ++ K E +RRE E+ N ++ ++R + S
Sbjct: 946 IPEEEMERIEEEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTTKS 996
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/53 (18%), Positives = 30/53 (56%)
Query: 284 SSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEER 336
+S+E +++S+P ++ + +K D E+E+ ++ K + + + + E++
Sbjct: 167 ASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKNNTKKQKVEGTPVKEKK 219
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 27.1 bits (57), Expect = 4.9
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 71 KVESALDEPEVVKSDSP--KTVEIPENETLEQMAVRELMEDTKKKVNIETSAITVPLPAK 128
K E+A +V K ++ K+ E +T + + E+TKK V +ET + P P
Sbjct: 198 KRENAKVPKDVSKKEAKTTKSKEKATKKTSSSVPKQSTGENTKKAVKLETPLTSTP-PIP 256
Query: 129 PVTDGE-KESTLDDYDSVP 146
P+++ + +T++++ S P
Sbjct: 257 PLSEPKHSPATVNEHISPP 275
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 27.1 bits (57), Expect = 4.9
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 289 DIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERS 337
DI+ PK K+ YE + E++D K +K+ + + G+ S
Sbjct: 37 DIKYQPKGAMKEVIYELPEVHEKKDKKPEKRKKDQKEASEKKKKGKRTS 85
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 6.5
Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 256 TKSEFDKESKVINAXXXXXXXXXXXVPQSSKE-KDIESSPKRETKKEKYEHTDRREREDW 314
+ S D ES+ + +SS E D SS + E D
Sbjct: 129 SSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSD 188
Query: 315 SNGKNRKEDRHRRDSSSTGEERS 337
S ++ ED SSS E S
Sbjct: 189 SESESSSEDSDSSSSSSDSESES 211
Score = 26.6 bits (56), Expect = 6.5
Identities = 19/96 (19%), Positives = 25/96 (26%)
Query: 284 SSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSSTGEERSQXXXXX 343
SS++ D SS + E +D S ++ ED SSS E S
Sbjct: 194 SSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSD 253
Query: 344 XXRYXXXXXXXXXXXXXXXXXXXXXXXXXXSVDSED 379
S DS D
Sbjct: 254 SSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSD 289
>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 714
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 107 MEDTKKKVNIETSAITVPLPAKPV--TDGEKESTLDDYDSV 145
+E KK TSA + LP+ PV D + ++ LD ++ V
Sbjct: 374 LESNKKPYRSPTSAADMKLPSVPVAAVDNKSKTHLDTFEKV 414
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 8.6
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 284 SSKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHR-RDSSSTGEERSQ 338
S + E R ++ Y++ D R+ +D S+ + R R R R S + EER +
Sbjct: 185 SRSRRRYEERSSRSSRAHDYDYEDLRD-DDRSHERKRSRSRPRERSSKLSEEERDR 239
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 26.2 bits (55), Expect = 8.6
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 285 SKEKDIESSPKRETKKEKYEHTDRREREDWSNGKNRKEDRHRRDSSST 332
SK KD + K E+K +H++RRE S + +E +R S ST
Sbjct: 143 SKLKDRTEASKEESKTVT-DHSNRRESRRESTYYDSRERNGKRTSRST 189
>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 26.2 bits (55), Expect = 8.6
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 262 KESKV-INAXXXXXXXXXXXVPQSSK-EKDIESSPKRETKKEKYEHTDRREREDWSNGKN 319
++SKV IN + + ++D+E E KK+K + E K
Sbjct: 415 QQSKVQINGTSAYSTATDAVTKDAEESQEDVEMDIVIEKKKKKSSKLKEADGESSKKEKK 474
Query: 320 RKEDRHRRDSSSTGEE 335
K+D+ + S EE
Sbjct: 475 EKKDKKHKKSKRKSEE 490
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.306 0.127 0.347
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,208
Number of Sequences: 5004
Number of extensions: 67410
Number of successful extensions: 243
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 206
Number of HSP's gapped (non-prelim): 51
length of query: 420
length of database: 2,362,478
effective HSP length: 75
effective length of query: 345
effective length of database: 1,987,178
effective search space: 685576410
effective search space used: 685576410
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 55 (26.2 bits)
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