GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001455-TA|BGIBMGA001455-PA|undefined
         (152 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    22   2.0  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   2.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   2.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   6.1  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    20   8.1  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    20   8.1  

>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 25  VVPQQASTAASTGPSQPTHRASWSYG 50
           V+P   + A+S G   P H +S+  G
Sbjct: 106 VLPGNYANASSVGSRNPIHTSSYMTG 131


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 25  VVPQQASTAASTGPSQPTHRASWSYG 50
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 25  VVPQQASTAASTGPSQPTHRASWSYG 50
           V+P   + A+S G   P H +S+  G
Sbjct: 339 VLPGNYANASSVGSRNPIHTSSYMTG 364


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 23   LTVVPQQASTAASTGPSQPTH 43
            +T  P Q +T   TG S   H
Sbjct: 1010 VTPAPPQVTTGVDTGASSTEH 1030


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
          protein.
          Length = 343

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 27 PQQASTAASTGPS 39
          PQ +S++AST P+
Sbjct: 45 PQHSSSSASTSPA 57


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
          protein.
          Length = 209

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 27 PQQASTAASTGPS 39
          PQ +S++AST P+
Sbjct: 45 PQHSSSSASTSPA 57


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.128    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,326
Number of Sequences: 317
Number of extensions: 1093
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 152
length of database: 114,650
effective HSP length: 52
effective length of query: 100
effective length of database: 98,166
effective search space:  9816600
effective search space used:  9816600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 40 (20.2 bits)