Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001455-TA|BGIBMGA001455-PA|undefined
(152 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232 30 0.93
01_05_0461 + 22446797-22447050,22447171-22447288,22447895-224482... 28 2.8
05_01_0006 - 44159-44206,44805-44850,45730-45818,46377-46394,464... 28 3.7
11_01_0024 + 163588-163897,164303-164406 27 6.5
09_06_0224 + 21661317-21661386,21663735-21663865,21663904-216639... 27 6.5
02_05_0888 - 32517876-32518087,32518320-32518694,32519551-325196... 27 8.6
01_01_0292 - 2387653-2387711,2388061-2388684,2388814-2389104,238... 27 8.6
>08_02_0133 - 12997143-12997331,12997420-12997510,12997934-12998232
Length = 192
Score = 29.9 bits (64), Expect = 0.93
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Query: 14 PRILANKTSLTVVPQQASTAASTGPSQPTHRASWSYGTQFHCFITPLQFIAAHDR-IINA 72
PR+L TSL V P +S A S A+ S + FH + ++ + D+ +I
Sbjct: 103 PRLLPPSTSLLVSPDHSSPPADVKDSTAC-PANSSKQSNFHSSMFEIRSNVSKDKEVIKV 161
Query: 73 WGHTSPAWQLCITWTTHDTHATFK 96
+T P +CI +H K
Sbjct: 162 KRNTIPIQYICIETPNKTSHRAAK 185
>01_05_0461 +
22446797-22447050,22447171-22447288,22447895-22448217,
22448908-22449056,22449324-22449463,22449606-22449757,
22449862-22450021,22450071-22450088
Length = 437
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/49 (26%), Positives = 24/49 (48%)
Query: 33 AASTGPSQPTHRASWSYGTQFHCFITPLQFIAAHDRIINAWGHTSPAWQ 81
A+STG +P +W+ G++ L F AA+ ++ + + WQ
Sbjct: 26 ASSTGEERPDLPWAWALGSERRVLALALAFRAANALLVRTYFNPDEHWQ 74
>05_01_0006 -
44159-44206,44805-44850,45730-45818,46377-46394,
46490-46609,46702-46772,47038-47086,47567-47658,
47769-47811,47928-48049,48143-48426,48961-49148,
49220-49336,49516-49557,49991-50101,50530-50688,
50710-50769,50850-50927,51010-51103,51182-51483,
51659-51721,51808-51936
Length = 774
Score = 27.9 bits (59), Expect = 3.7
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 13 NPRILANKTSLTVVPQQASTAASTGPSQPTH-RASWS-YGTQFHCFITPLQFIAAHDRII 70
N + +K +L +VPQQA + + S P R W G + H I P + A +
Sbjct: 380 NAIVTTSKANLDIVPQQAYSHVQSPMSSPVRARRDWDLLGNENHQAI-PSEVTAVNTEHE 438
Query: 71 NAWGHTSPA 79
N G TSP+
Sbjct: 439 NV-GTTSPS 446
>11_01_0024 + 163588-163897,164303-164406
Length = 137
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 16 ILANKTSLTVVPQQASTAASTGPSQPTHRASWSYGTQFHCFITPLQFIAAHDRII 70
+ + + T P T A + P+ PTH WS T H L+ I +R++
Sbjct: 64 LYSTHATTTPPPAGTMTVAPSTPNAPTHHGRWSRQTH-HPHEKDLERIEKSNRVL 117
>09_06_0224 +
21661317-21661386,21663735-21663865,21663904-21663983,
21664248-21664372,21664745-21664830,21664932-21665168,
21665261-21665380,21665502-21665602,21665655-21665758,
21665851-21666047
Length = 416
Score = 27.1 bits (57), Expect = 6.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 17 LANKTSLTVVPQQASTAASTGPSQPTHRASWSY 49
+ ++ SL ++ ++ AA P PTHR WS+
Sbjct: 1 MESEYSLLLMDDRSINAAFDHPPGPTHRCYWSF 33
>02_05_0888 -
32517876-32518087,32518320-32518694,32519551-32519638,
32520145-32520384,32521033-32521149,32521213-32521606,
32521752-32521998,32522086-32522315,32522768-32522823,
32522903-32523094,32523274-32523376,32523478-32523544,
32524312-32525154,32525547-32525670,32525965-32526213,
32526354-32526443,32526530-32526649,32526664-32526738,
32527001-32527147,32527255-32527365,32527446-32527667,
32527777-32527896,32527971-32528270,32528355-32528480,
32529246-32529360,32529556-32530019,32530119-32530253,
32530684-32530788,32530876-32531053,32531143-32531864
Length = 2188
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 2 LLHRIKNFGYHNPRILANKTSLTVVP 27
L +IK FGY++P +++ + S +VP
Sbjct: 878 LWSKIKTFGYYSPGMISQQPSENLVP 903
>01_01_0292 -
2387653-2387711,2388061-2388684,2388814-2389104,
2389338-2389390,2390496-2390968,2391090-2391432,
2391793-2391911,2392081-2392512,2392657-2392747,
2392833-2392942,2393681-2393875,2394581-2394622,
2395144-2395268,2395856-2395926,2396047-2396147
Length = 1042
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 52 QFHCFITPLQFIAAHDRIINAW 73
QF +++PL+ + A D +I+AW
Sbjct: 648 QFRPYLSPLKLVRAADPLIDAW 669
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.128 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,746,439
Number of Sequences: 37544
Number of extensions: 125780
Number of successful extensions: 287
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 283
Number of HSP's gapped (non-prelim): 7
length of query: 152
length of database: 14,793,348
effective HSP length: 76
effective length of query: 76
effective length of database: 11,940,004
effective search space: 907440304
effective search space used: 907440304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)
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