GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001455-TA|BGIBMGA001455-PA|undefined
         (152 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S57235-1|AAB25811.1|  354|Homo sapiens CD68 protein.                   31   2.2  
BT009923-1|AAP88925.1|  354|Homo sapiens CD68 antigen protein.         31   2.2  
BC015557-1|AAH15557.1|  354|Homo sapiens CD68 molecule protein.        31   2.2  
AK222492-1|BAD96212.1|  354|Homo sapiens CD68 antigen variant pr...    31   2.2  
AK222514-1|BAD96234.1|  354|Homo sapiens CD68 antigen variant pr...    30   3.8  
M22405-1|AAA36334.1|  278|Homo sapiens protein ( Human intestina...    29   6.6  

>S57235-1|AAB25811.1|  354|Homo sapiens CD68 protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 12  HNPRILANKTSLTVVPQQASTAASTGPSQPTHR-ASWSYG 50
           HNP   ++  ++TV P   STA S GPS  TH  A+ S+G
Sbjct: 79  HNPTTTSHG-NVTVHPTSNSTATSQGPSTATHSPATTSHG 117


>BT009923-1|AAP88925.1|  354|Homo sapiens CD68 antigen protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 12  HNPRILANKTSLTVVPQQASTAASTGPSQPTHR-ASWSYG 50
           HNP   ++  ++TV P   STA S GPS  TH  A+ S+G
Sbjct: 79  HNPTTTSHG-NVTVHPTSNSTATSQGPSTATHSPATTSHG 117


>BC015557-1|AAH15557.1|  354|Homo sapiens CD68 molecule protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 12  HNPRILANKTSLTVVPQQASTAASTGPSQPTHR-ASWSYG 50
           HNP   ++  ++TV P   STA S GPS  TH  A+ S+G
Sbjct: 79  HNPTTTSHG-NVTVHPTSNSTATSQGPSTATHSPATTSHG 117


>AK222492-1|BAD96212.1|  354|Homo sapiens CD68 antigen variant
           protein.
          Length = 354

 Score = 30.7 bits (66), Expect = 2.2
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 12  HNPRILANKTSLTVVPQQASTAASTGPSQPTHR-ASWSYG 50
           HNP   ++  ++TV P   STA S GPS  TH  A+ S+G
Sbjct: 79  HNPTTTSHG-NVTVHPTSNSTATSQGPSTATHSPATTSHG 117


>AK222514-1|BAD96234.1|  354|Homo sapiens CD68 antigen variant
           protein.
          Length = 354

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 12  HNPRILANKTSLTVVPQQASTAASTGPSQPTHR-ASWSYG 50
           HNP   ++  ++TV P   STA S GPS  TH  A+ S+G
Sbjct: 79  HNPTTTSHG-NVTVHPTGNSTATSQGPSTATHSPATTSHG 117


>M22405-1|AAA36334.1|  278|Homo sapiens protein ( Human intestinal
           mucin mRNA, partial cds, clone SMUC 41. ).
          Length = 278

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 10  GYHNPRILANKTSLTVVPQQASTAASTGPSQPTHRAS 46
           G   P ++   T+ TV P    T  STGP  PTH ++
Sbjct: 95  GTQTPTMIPISTTTTVTPTPTPTTGSTGP--PTHTST 129


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.128    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,495,970
Number of Sequences: 224733
Number of extensions: 710184
Number of successful extensions: 1464
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1464
Number of HSP's gapped (non-prelim): 6
length of query: 152
length of database: 73,234,838
effective HSP length: 84
effective length of query: 68
effective length of database: 54,357,266
effective search space: 3696294088
effective search space used: 3696294088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 61 (28.7 bits)