GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001455-TA|BGIBMGA001455-PA|undefined
         (152 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    29   1.4  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    29   1.4  
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    29   1.9  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    28   2.5  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    28   2.5  
AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical ...    27   5.8  

>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 28  QQASTAASTGPSQPTHRASWSYGTQFHCFITPLQFIAAHDRIINAWGHTSPAWQLCITWT 87
           Q    A   G S P  + SW+     H     L   A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 88  THDTHAT 94
            H+   T
Sbjct: 102 AHEASTT 108


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 28  QQASTAASTGPSQPTHRASWSYGTQFHCFITPLQFIAAHDRIINAWGHTSPAWQLCITWT 87
           Q    A   G S P  + SW+     H     L   A++D+ +  W      WQ    W 
Sbjct: 47  QSYPMAELVGHSGPVWKVSWA-----HPKYGGLLASASYDKKVIIWNEQQGRWQKAYEWA 101

Query: 88  THDTHAT 94
            H+   T
Sbjct: 102 AHEASTT 108


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 8   NFGYHNPRILANKTSLTVVPQQASTAASTGPSQPTHRASW 47
           +FG+H P +  ++T   VV ++A   A+ G      +  W
Sbjct: 188 SFGFHLPHVSEDRTKTGVVEREAKLIAANGKFHSVPKRRW 227


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
          protein D1007.13a protein.
          Length = 142

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 27 PQQASTAASTGPSQPTHRASWSYGTQFHCFITPLQFIAAHDRIINAWGHTSP 78
          P   ++ +ST  S P   +S +YG+       P  F  +     ++WG T P
Sbjct: 15 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 66


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 27  PQQASTAASTGPSQPTHRASWSYGTQFHCFITPLQFIAAHDRIINAWGHTSP 78
           P   ++ +ST  S P   +S +YG+       P  F  +     ++WG T P
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 171


>AF038619-3|AAO91713.1|  126|Caenorhabditis elegans Hypothetical
          protein F56A11.7 protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)

Query: 2  LLHRIKNFGYHNPRILANKT---SLTVVPQQASTAASTGPSQPTHRASWSYGTQFH 54
          LLH + N       +++N     +LT V Q    ++  G ++  HR  WS GTQ H
Sbjct: 31 LLHALLNQKEKGASVISNANYFLTLTCVLQDLYLSSCHG-NEYGHRDLWSVGTQLH 85


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.128    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,084,356
Number of Sequences: 27539
Number of extensions: 102735
Number of successful extensions: 235
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 6
length of query: 152
length of database: 12,573,161
effective HSP length: 75
effective length of query: 77
effective length of database: 10,507,736
effective search space: 809095672
effective search space used: 809095672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 56 (26.6 bits)