GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001455-TA|BGIBMGA001455-PA|undefined
         (152 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36290.1 68417.m05160 ATP-binding region, ATPase-like domain-...    31   0.34 
At1g64410.1 68414.m07301 hypothetical protein                          27   4.1  
At4g36280.1 68417.m05159 ATP-binding region, ATPase-like domain-...    26   9.6  

>At4g36290.1 68417.m05160 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 635

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 9   FGYHNPRILANKTSLTVVPQQASTAASTGPSQ-PTHRAS 46
           FGY   +I A+K+  TV+P Q  T  +  PS  P+ R S
Sbjct: 477 FGYQTAQIPADKSKRTVIPDQPPTVNTYNPSPLPSDRIS 515


>At1g64410.1 68414.m07301 hypothetical protein
          Length = 1231

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 6    IKNFGYHNPRILANKTSLTVVPQQASTAASTGPSQPTHRASW--SYG 50
            +++ G + PR + +   L V   + ++   T  S+PT R SW  SYG
Sbjct: 1179 LESVGLYLPRPVFSHGQLYVAISRVTSKTGTNVSKPTLRQSWKESYG 1225


>At4g36280.1 68417.m05159 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 626

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 10  GYHNPRILANKTSLTVVPQQASTAASTGPS 39
           GYH  ++ A+K+    +P Q  T ++  PS
Sbjct: 470 GYHKYQMPADKSKKIAIPDQPPTISTVNPS 499


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.128    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,943,893
Number of Sequences: 28952
Number of extensions: 95933
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 184
Number of HSP's gapped (non-prelim): 3
length of query: 152
length of database: 12,070,560
effective HSP length: 75
effective length of query: 77
effective length of database: 9,899,160
effective search space: 762235320
effective search space used: 762235320
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)