GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001454-TA|BGIBMGA001454-PA|undefined
         (70 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    25   0.076
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   1.6  
DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory pro...    19   3.8  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    18   8.7  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    18   8.7  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.076
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 19  SDPVKFGSDRIKVKSKIGQTRLGT-NTHKEYLSETNIDKTNRIELKHLL 66
           +D + FG++ ++ + +   TR  T    KE+ +   + +  RIE+ H L
Sbjct: 212 ADSMTFGANGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHAL 260


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 20.6 bits (41), Expect = 1.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 24  FGSDRIKVKSKIGQTRLGTNTH 45
           FG+ RI+ K  IG+ +   N +
Sbjct: 281 FGNKRIRYKKNIGKAQEEANLY 302


>DQ855490-1|ABH88177.1|  133|Tribolium castaneum chemosensory
          protein 4 protein.
          Length = 133

 Score = 19.4 bits (38), Expect = 3.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 44 THKEYLSETNIDKTNRIELKHLLR 67
          THK      NID  N ++ + LL+
Sbjct: 23 THKYTTKYDNIDLENVVKNERLLK 46


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 42  TNTHKEYLSETN 53
           TNTHK  +  T+
Sbjct: 352 TNTHKRKIENTS 363


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
          protein.
          Length = 96

 Score = 18.2 bits (35), Expect = 8.7
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 46 KEYLSETNIDKTNRIELKHLL 66
          KE+ +   + +  RIE+ H L
Sbjct: 22 KEFHTNHYLTRRRRIEMAHAL 42


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663
Number of Sequences: 317
Number of extensions: 475
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 114,650
effective HSP length: 44
effective length of query: 26
effective length of database: 100,702
effective search space:  2618252
effective search space used:  2618252
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.8 bits)
S2: 35 (18.2 bits)