GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001454-TA|BGIBMGA001454-PA|undefined
         (70 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    25   1.6  
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   2.8  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    23   3.7  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    23   4.9  
SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr ...    23   4.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    23   6.5  
SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    23   6.5  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           23   6.5  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    22   8.6  

>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 25  GSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNRIEL 62
           GS+R + +S I Q+ + TN      SE  + K N I++
Sbjct: 317 GSERTETRSSIDQSEMRTNVSDSTKSE-ELKKINSIKV 353


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query: 17  PASDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNI 54
           P  DP    S  +KVK K+ + ++    + E  S  N+
Sbjct: 291 PFDDPFDLTSQYVKVKLKMLRLQIANKKNSEEFSTLNL 328


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1919

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 7   RKFSGNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNRIE 61
           R  S  +  GP+   ++     I  K+ +  +R+ +  H +   ETN D  NR E
Sbjct: 553 RLLSAYVSFGPSFTRMQLSQLLILWKNAL--SRVPSKIHSQNFMETNADMFNRFE 605


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
            Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 13   LQAGPASDPVKFGSDRIKVKSK 34
            ++A P S PVK  S  IK   K
Sbjct: 1105 IRARPCSQPVKHSSSEIKAAMK 1126


>SPAC664.12c |||LYR family protein|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 79

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 30 KVKSKIGQTRLGTNTHKEYLSETNIDKTNRIELKHLLRV 68
          K K +    R     H+E+     I K +   ++HLLRV
Sbjct: 22 KAKEQPYNERWMAFVHQEFRKNQTISKRDFFYIEHLLRV 60


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 14/46 (30%), Positives = 19/46 (41%)

Query: 14  QAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNR 59
           Q  P +D V + S+R  V  +       T+ H    S TN D   R
Sbjct: 386 QVWPVTDLVNYSSERKHVFIEFNSDSGITSLHLHASSNTNADNIIR 431


>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 24  FGSDRIKVKSKIGQTRLGTNT 44
           F  DRI+ +SK+   R+  NT
Sbjct: 502 FYGDRIRARSKLASQRVPINT 522


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 22.6 bits (46), Expect = 6.5
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 10 SGNLQAGPASDPVKFGS--DRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNRIELK 63
          S + Q G  +   ++ S  D I+    +   R   N  KE L +  + KT+  ELK
Sbjct: 10 SSSSQDGSKTPETEYDSHVDSIEDIHSLASKRKKLNEKKENLEDLTLLKTSAFELK 65


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 37  QTRLGTNTHKEYLSETNIDKTNRIELKHL 65
           +T L  ++  E L ET +D  NR    HL
Sbjct: 785 ETNLFISSAVEVLRETLLDAANRAVASHL 813


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 285,406
Number of Sequences: 5004
Number of extensions: 8593
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 9
length of query: 70
length of database: 2,362,478
effective HSP length: 50
effective length of query: 20
effective length of database: 2,112,278
effective search space: 42245560
effective search space used: 42245560
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 45 (22.2 bits)