GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001454-TA|BGIBMGA001454-PA|undefined
         (70 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     27   2.5  
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336...    25   7.5  
11_06_0500 + 24362627-24362828,24363046-24363704,24364958-243653...    25   9.9  
01_05_0153 + 18635495-18636952,18637262-18637333,18637448-186375...    25   9.9  

>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 9   FSGNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKE 47
           F+G+  + P +D  +    R+K+K++     LG +T+ E
Sbjct: 637 FTGSRASSPVADKHEQSDRRVKMKTENSNPHLGNDTNAE 675


>02_01_0471 -
           3364215-3364912,3365511-3365742,3365827-3366198,
           3366324-3366449,3367056-3367262,3367399-3367492,
           3367575-3367621,3367705-3368157,3368261-3368560,
           3368656-3369114,3369189-3369410,3369659-3369890,
           3370051-3370422,3371210-3371322,3371682-3371903,
           3371977-3372180,3372308-3372572,3373123-3373311,
           3373441-3373768,3373843-3374248,3374339-3374648,
           3375677-3375837,3376825-3376998,3377265-3377609,
           3377713-3377754,3378585-3378734,3378847-3379002,
           3379088-3379540,3379651-3379966,3380402-3380839,
           3381475-3381697,3383538-3383852,3384033-3384095,
           3384699-3384903,3385362-3385425,3386014-3386204
          Length = 3048

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 19  SDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDK 56
           S+ V+  S   K+KS I    L  N  KEY + + + K
Sbjct: 684 SENVQMSSSDEKIKSTIACVELAFNLFKEYTTISELGK 721


>11_06_0500 +
           24362627-24362828,24363046-24363704,24364958-24365300,
           24366227-24366645
          Length = 540

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 25  GSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNR--IELKHLL 66
           GSD ++   K+  TR+  NT     SET +++  R  +E +++L
Sbjct: 402 GSDEMQQGVKVDTTRVIENTASTVDSETPVEQKRRKKVETEYVL 445


>01_05_0153 +
           18635495-18636952,18637262-18637333,18637448-18637595,
           18637690-18637871
          Length = 619

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 5   IMRKFSGNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNRIELKH 64
           I+RK   ++   P  D V+ G++   V     Q  +  +T  EY   T +DK N  EL  
Sbjct: 386 IVRKLVSSVLPRPM-DIVQDGNNGSTVADSAAQALVLLSTGSEYNRATILDKINLEELVG 444

Query: 65  LL 66
           +L
Sbjct: 445 ML 446


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,713,859
Number of Sequences: 37544
Number of extensions: 49602
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 14,793,348
effective HSP length: 50
effective length of query: 20
effective length of database: 12,916,148
effective search space: 258322960
effective search space used: 258322960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)