GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001454-TA|BGIBMGA001454-PA|undefined
         (70 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32287| Best HMM Match : fn3 (HMM E-Value=1e-14)                     27   1.6  
SB_55979| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.8  
SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)               26   4.8  
SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)                 25   6.4  
SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)                     25   8.5  

>SB_32287| Best HMM Match : fn3 (HMM E-Value=1e-14)
          Length = 246

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 16  GPASDPVKFGSDRIKVKSKIGQ 37
           GP SDPVK G D I + + + Q
Sbjct: 206 GPRSDPVKAGRDTINLDTSLSQ 227


>SB_55979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 9  FSGNLQAGPASDPVKFGSDRIKVKSKIG-QTRLGTNTHKEYLSETNIDKTNRI 60
          F  +L AGP   P+K G+ R+  +   G Q  +    + E++S   ID    +
Sbjct: 18 FDLSLAAGPHVSPIKQGNLRVSAQFAEGLQDTVNCILYAEFVSLIEIDSNRNV 70


>SB_26017| Best HMM Match : Extensin_2 (HMM E-Value=0.11)
          Length = 1704

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)

Query: 41   GTNTHKEYLSETNIDKTNRIELKH 64
            GTN HK+  S+ N   T+R+++++
Sbjct: 1462 GTNPHKQCSSKINKPSTSRLQMRY 1485


>SB_17878| Best HMM Match : Drf_FH1 (HMM E-Value=0.022)
          Length = 664

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 10  SGNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTN 58
           S N   G   +  K   D+ K KSK     +     +E   ET I+KT+
Sbjct: 403 SENSNTGNVENEKKGTKDKTKKKSKNNSKNIEEEDGREKPKETRIEKTD 451


>SB_7843| Best HMM Match : DUF740 (HMM E-Value=0.5)
          Length = 1362

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)

Query: 19  SDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDK 56
           + P++F S  I    K+ +TR+      E+ +ETN  K
Sbjct: 878 TSPIRFTSTTIPENVKLIRTRIAEREKLEFDTETNTAK 915


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,021,946
Number of Sequences: 59808
Number of extensions: 60074
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 88
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 16,821,457
effective HSP length: 49
effective length of query: 21
effective length of database: 13,890,865
effective search space: 291708165
effective search space used: 291708165
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)