GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001454-TA|BGIBMGA001454-PA|undefined
         (70 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical pr...    25   8.6  
Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical p...    25   8.6  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    25   8.6  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    25   8.6  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    25   8.6  
AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical ...    25   8.6  

>U97550-2|AAK18979.1|  280|Caenorhabditis elegans Hypothetical
           protein T20F7.3 protein.
          Length = 280

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 31  VKSKIGQTRLGTNTHKEYLSETNIDKTNRIE 61
           V  +I   +LGT TH +Y+SE    K N I+
Sbjct: 117 VSPRILDLKLGTRTHSDYISEEK--KINHIK 145


>Z81016-6|CAB02667.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 8   KFSGNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKE 47
           ++  ++ A P  D V   S    V   I + R+ T+THK+
Sbjct: 920 EYDDDVMASPIIDHVLGTSHMSTVSGIINRRRISTSTHKQ 959


>Z48621-13|CAA88549.1| 1573|Caenorhabditis elegans Hypothetical
           protein F21G4.2 protein.
          Length = 1573

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/40 (30%), Positives = 20/40 (50%)

Query: 8   KFSGNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKE 47
           ++  ++ A P  D V   S    V   I + R+ T+THK+
Sbjct: 920 EYDDDVMASPIIDHVLGTSHMSTVSGIINRRRISTSTHKQ 959


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 10   SGNLQAGPASDPVKF 24
            + +L  GPASDPV+F
Sbjct: 1117 TNDLSEGPASDPVRF 1131


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 10   SGNLQAGPASDPVKF 24
            + +L  GPASDPV+F
Sbjct: 1180 TNDLSEGPASDPVRF 1194


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)

Query: 10   SGNLQAGPASDPVKF 24
            + +L  GPASDPV+F
Sbjct: 1180 TNDLSEGPASDPVRF 1194


>AF125462-6|AAD12857.2|  239|Caenorhabditis elegans Hypothetical
          protein Y66H1A.2 protein.
          Length = 239

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)

Query: 23 KFGSDRIKVKSKIGQTRLGT 42
          ++G D+I +K ++G+  LGT
Sbjct: 59 EYGDDKILIKPRVGKLGLGT 78


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,509,868
Number of Sequences: 27539
Number of extensions: 45774
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59
Number of HSP's gapped (non-prelim): 7
length of query: 70
length of database: 12,573,161
effective HSP length: 50
effective length of query: 20
effective length of database: 11,196,211
effective search space: 223924220
effective search space used: 223924220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)