GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001454-TA|BGIBMGA001454-PA|undefined
         (70 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   0.20 
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    22   0.82 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   3.3  
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               19   4.4  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   7.6  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.8 bits (49), Expect = 0.20
 Identities = 12/51 (23%), Positives = 22/51 (43%)

Query: 10  SGNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNRI 60
           +G  + GP+ DP+   S R+KV    G      +   + +S   +   N +
Sbjct: 546 TGTAKMGPSYDPMAVVSPRLKVHGIRGLRVADASVQPQVISGNPVASVNMV 596


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 0.82
 Identities = 8/30 (26%), Positives = 15/30 (50%)

Query: 36  GQTRLGTNTHKEYLSETNIDKTNRIELKHL 65
           G+     +  +EY  +   D+ + +E KHL
Sbjct: 249 GERSCSRDRSREYKKDRRYDQLHNVEEKHL 278


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic
          acetylcholine receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 3.3
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query: 21 PVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNI 54
          PV   SDR+ VK  +  ++L     K  +  TN+
Sbjct: 38 PVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNV 71


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 19.4 bits (38), Expect = 4.4
 Identities = 9/41 (21%), Positives = 21/41 (51%)

Query: 27 DRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNRIELKHLLR 67
          D IK++  + +  +     K+YL+  +   T  +E  H+++
Sbjct: 50 DFIKMQELLQEEDISEGNIKKYLTNYSCFITCALEKSHIIQ 90


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 18.6 bits (36), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 46  KEYLSETNIDKTNR 59
           K + S TN+D +NR
Sbjct: 377 KCFKSRTNLDPSNR 390


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031
Number of Sequences: 429
Number of extensions: 619
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 140,377
effective HSP length: 45
effective length of query: 25
effective length of database: 121,072
effective search space:  3026800
effective search space used:  3026800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.3 bits)
S2: 36 (18.6 bits)