GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001454-TA|BGIBMGA001454-PA|undefined
         (70 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    28   0.66 
At1g69070.1 68414.m07903 expressed protein                             26   3.5  
At2g31081.1 68415.m03793 Clavata3 / ESR-Related-4 (CLE4) CLAVATA...    25   4.7  
At1g60540.1 68414.m06815 dynamin family protein similar to SP|Q9...    25   4.7  

>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
           contains weak similarity to Swiss-Prot:Q9NZW4 dentin
           sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 6/60 (10%)

Query: 4   SIMRKFS----GNLQAGPASDPVKFGSDRIKVKSKIGQTRLGTNTHKEYLSETNIDKTNR 59
           SI RKF     GN+      +P +    R      +GQ  + T T K ++S+ ++++TN+
Sbjct: 695 SIPRKFQYHPMGNIDV--TDEPCRGKVSRFGQSQSLGQPAMNTLTDKGHVSQNDLNRTNK 752


>At1g69070.1 68414.m07903 expressed protein
          Length = 901

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 8   KFSGNLQAGPASDPVKFGSDRIKVKSKIGQTRLG 41
           KF  N   G  +DP K+ SD  K+K K+ +   G
Sbjct: 808 KFEENFVPGMDNDPDKYRSDLKKLKRKLKREARG 841


>At2g31081.1 68415.m03793 Clavata3 / ESR-Related-4 (CLE4)
          CLAVATA3/ESR-Related 4 (CLE4)
          Length = 80

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)

Query: 26 SDRIKVKSKIGQTRLGT 42
          S+ +KV+SK GQT LGT
Sbjct: 48 SEELKVRSKDGQTVLGT 64


>At1g60540.1 68414.m06815 dynamin family protein similar to
           SP|Q91192 Interferon-induced GTP-binding protein Mx
           {Oncorhynchus mykiss}; contains Pfam profiles PF01031:
           Dynamin central region, PF00350: Dynamin family,
           PF02212: Dynamin GTPase effector domain
          Length = 648

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)

Query: 5   IMRKFSGNLQAGPASDPVKFGSDRIKV 31
           ++ +FS NLQA P +   +F  D IKV
Sbjct: 396 MLNRFSDNLQAQPQAVTEEFLMDEIKV 422


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.131    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,465,763
Number of Sequences: 28952
Number of extensions: 43899
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 12,070,560
effective HSP length: 50
effective length of query: 20
effective length of database: 10,622,960
effective search space: 212459200
effective search space used: 212459200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)