GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001453-TA|BGIBMGA001453-PA|undefined
         (77 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   0.84 
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      21   1.5  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      19   4.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   5.9  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    19   5.9  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   7.8  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   7.8  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   7.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 0.84
 Identities = 11/26 (42%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 41  PYFDNSTKRDYTAAVGQPAYLHCRVK 66
           P FD    R+ T+  G PA L C  K
Sbjct: 797 PQFDIKL-RNQTSRRGDPAVLQCEAK 821


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 21.0 bits (42), Expect = 1.5
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 59  AYLHCRVKNLADRAAQ 74
           A++HC VK+ + +AA+
Sbjct: 91  AHIHCSVKSESSQAAK 106


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 19.4 bits (38), Expect = 4.5
 Identities = 12/49 (24%), Positives = 23/49 (46%)

Query: 12 GEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAY 60
          G+G D +  S   T + S++   TES  +     S+ ++ + A   P +
Sbjct: 25 GDGEDEKRSSENLTEEKSSLIDLTESEEKSGGSYSSNKNVSRADHSPVF 73


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 21  SVTTTVDYSNVTGTTESVGQPYFDNS 46
           SV TT  Y +      +  QP  DNS
Sbjct: 107 SVPTTASYGSDLYFPGATSQPPTDNS 132


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative
          cytochrome P450 monooxigenase protein.
          Length = 126

 Score = 19.0 bits (37), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 27 DYSNVTGTTESVGQ 40
          DY+   GTT  +GQ
Sbjct: 79 DYTLPVGTTVGIGQ 92


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 30  NVTGTTESVGQPYFDNST 47
           N   TT +  QPY  N+T
Sbjct: 318 NPEHTTVNEAQPYVRNTT 335


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 30  NVTGTTESVGQPYFDNST 47
           N   TT +  QPY  N+T
Sbjct: 266 NPEHTTVNEAQPYVRNTT 283


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 18.6 bits (36), Expect = 7.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 30  NVTGTTESVGQPYFDNST 47
           N   TT +  QPY  N+T
Sbjct: 449 NPEHTTVNEAQPYVRNTT 466


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,330
Number of Sequences: 317
Number of extensions: 550
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 77
length of database: 114,650
effective HSP length: 46
effective length of query: 31
effective length of database: 100,068
effective search space:  3102108
effective search space used:  3102108
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.1 bits)
S2: 36 (18.6 bits)