GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001453-TA|BGIBMGA001453-PA|undefined
         (77 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma...    26   0.69 
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   1.6  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    24   2.8  
SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces ...    24   2.8  
SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces ...    23   4.9  
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S...    23   4.9  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    23   6.4  
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa...    23   6.4  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    22   8.5  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    22   8.5  
SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual    22   8.5  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    22   8.5  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    22   8.5  

>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 358

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 28  YSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAY 60
           Y++  G TE+V   Y+D + +R  T    +P Y
Sbjct: 255 YTSTEGNTEAVNVFYYDPTVERILTCDCVRPVY 287


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 28  YSNVTGTTESVGQPYFDNSTK 48
           YS+ T  T S GQP FDN  +
Sbjct: 521 YSSTTARTRSAGQP-FDNEVQ 540


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query: 6   DRGISAGEGGDGEDLSVTTTVDYSNVTGTTES 37
           D+ +S G+GG    ++  T ++ +N  GT ES
Sbjct: 465 DQQLSKGDGGLRSRITGLTKLEDANKAGTKES 496


>SPBC725.09c |hob3||BAR adaptor protein Hob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 40  QPYFDNSTKRDYT 52
           Q YFDNS + DY+
Sbjct: 225 QQYFDNSVREDYS 237


>SPBC3B9.18c |vma7||V-type ATPase subunit F |Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 120

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 34 TTESVGQPYFDNSTKRDYTAAVGQPAYLHCRVKNLADRAAQGFP 77
          T E + + + D +TKR   A V    +   R+++  +   Q FP
Sbjct: 48 TDEQIAEAFDDYTTKRKDIAIVLINQFAAERIRDRIENHVQAFP 91


>SPCC126.15c |sec65||signal recognition particle subunit Sec65
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 23.0 bits (47), Expect = 4.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 42 YFDNSTKRDYTAAVGQPAYLHCRVKNLAD 70
          YFD S  R +       A L+   KN+AD
Sbjct: 10 YFDKSRPRRFRCVPKDKAILNPLAKNIAD 38


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)

Query: 5   NDRGISAGEGGDGEDLSVTTTVDYSNVTGTTE 36
           N  G+S  EG +    S+TT  + S++  +++
Sbjct: 620 NSNGMSGTEGFENTQTSITTNDNQSSILTSSD 651


>SPBP19A11.01 |||glycine decarboxylase complex subunit
           H|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 169

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 9   ISAGEG-GDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTK 48
           +S G+G G  E +   + V YS V+GT  S+ +   D+  K
Sbjct: 88  VSVGDGIGAVESVKSASDV-YSPVSGTVTSINESLGDSPDK 127


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 29  SNVTGTTESVGQPYFDNSTKR 49
           S+++  T+ V   YF NST+R
Sbjct: 294 SSLSVFTQDVASRYFSNSTER 314


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 5   NDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQ 40
           N  GI+A +  D E++ +    D    +G T  V +
Sbjct: 324 NGNGITALDSTDSEEIDIMNGFDEERDSGGTNMVSR 359


>SPAC186.01 |||DIPSY family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 326

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 8/33 (24%), Positives = 18/33 (54%)

Query: 28  YSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAY 60
           +++  G  E +   Y+D++ +R  T    +P+Y
Sbjct: 217 FASTNGDNEGLNLFYYDSTIQRVLTCDCQRPSY 249


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 21  SVTTTVDYSNVTGTTESVGQ 40
           S  T VDY N  G  +SVG+
Sbjct: 694 SARTQVDYFNEYGKGDSVGE 713


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 12  GEGGDGEDLSVTTTVDYSNVTGTTESVGQPY 42
           G   + EDL + TTV      GTT +V + Y
Sbjct: 384 GHTYEPEDLYLETTVFMDGPYGTTSNVFKEY 414


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 353,715
Number of Sequences: 5004
Number of extensions: 11973
Number of successful extensions: 29
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 13
length of query: 77
length of database: 2,362,478
effective HSP length: 57
effective length of query: 20
effective length of database: 2,077,250
effective search space: 41545000
effective search space used: 41545000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)