GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001453-TA|BGIBMGA001453-PA|undefined
         (77 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683     33   0.022
04_03_0976 + 21376873-21377289,21377399-21377581,21378463-213785...    28   0.83 
12_02_0852 - 23690015-23690545                                         26   3.3  
03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843     26   3.3  
06_03_0990 + 26670639-26671127                                         26   4.4  
01_07_0186 - 41857468-41857759,41857856-41857977,41858148-418582...    26   4.4  
12_02_1089 - 25987384-25987611,25988255-25988419,25988607-259886...    25   5.9  
03_01_0465 + 3598815-3598972,3599949-3600711,3601073-3601159,360...    25   7.7  
01_01_0938 + 7400843-7401522,7402192-7403065                           25   7.7  

>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
          Length = 625

 Score = 33.5 bits (73), Expect = 0.022
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 5   NDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLH 62
           N  GI+ G GG G+D       DY N+   + S  +  F +ST       V  PA+LH
Sbjct: 135 NWSGIALGGGGSGDDDDDAAFSDYDNLNAFSSSNSELRFPSSTDHHRRHKV-HPAFLH 191


>04_03_0976 +
           21376873-21377289,21377399-21377581,21378463-21378591,
           21378869-21378999,21379111-21379270,21379783-21380067
          Length = 434

 Score = 28.3 bits (60), Expect = 0.83
 Identities = 12/39 (30%), Positives = 21/39 (53%)

Query: 5   NDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYF 43
           ++ G+  G GGDG+D ++     +S  T   E + + YF
Sbjct: 290 DEEGVEGGGGGDGDDETIAGGGSFSPNTDELEILLESYF 328


>12_02_0852 - 23690015-23690545
          Length = 176

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 9/14 (64%), Positives = 10/14 (71%)

Query: 4   WNDRGISAGEGGDG 17
           W DRG+  G GGDG
Sbjct: 162 WLDRGVRGGGGGDG 175


>03_06_0119 - 31799809-31800350,31800522-31801257,31801355-31801843
          Length = 588

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 8   GISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPY-FDNSTKRDYTAAVGQPAYLHCRVK 66
           G   G GG G   S T+T  +S ++  T+  G    F  S+ RD++ A     YL     
Sbjct: 70  GFRNGSGGGGGVRSFTSTFVFSIMSSFTDLAGHGIAFAVSSTRDFSGAAA-AEYL----- 123

Query: 67  NLADRAAQGFP 77
            L +RA  G P
Sbjct: 124 GLFNRATNGDP 134


>06_03_0990 + 26670639-26671127
          Length = 162

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query: 4   WNDRGISAGEGGDGEDL 20
           W + G++ G+GGDG  L
Sbjct: 96  WQEDGVAVGDGGDGPAL 112


>01_07_0186 -
           41857468-41857759,41857856-41857977,41858148-41858269,
           41858439-41858547,41860076-41860174,41860251-41860384,
           41860645-41860732,41860913-41860959,41861626-41861692,
           41861783-41862004
          Length = 433

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 9   ISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRD 50
           +S G  GD E    ++     +++G T S+G+ + ++S  +D
Sbjct: 208 LSMGMSGDFEQAVASSMAGSEDLSGLTASLGELHVESSALKD 249


>12_02_1089 -
          25987384-25987611,25988255-25988419,25988607-25988678,
          25989275-25989435,25989941-25989968
          Length = 217

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 12 GEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAY 60
          GE  D ++ SVT+T  ++ V   +     PY       D   A+GQ AY
Sbjct: 24 GEPEDQQEASVTSTDSHTMVATPSTDYATPY----AHHDMAHAMGQIAY 68


>03_01_0465 +
           3598815-3598972,3599949-3600711,3601073-3601159,
           3601263-3601346,3601428-3601514,3601608-3601694,
           3602239-3602292,3602380-3602471,3602564-3602678,
           3602763-3602913,3603010-3603155
          Length = 607

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 3/72 (4%)

Query: 9   ISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAA---VGQPAYLHCRV 65
           +S      G+  SV         TGT ++ G+ +F+    R YT     +G      C  
Sbjct: 142 LSGSTSNIGQSSSVNNGPTPVYPTGTEKNSGETWFEVGRSRTYTPTADDIGHALRFECVA 201

Query: 66  KNLADRAAQGFP 77
            +   R++ G P
Sbjct: 202 VDSETRSSVGAP 213


>01_01_0938 + 7400843-7401522,7402192-7403065
          Length = 517

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 7   RGISAGEGGDGEDLSV 22
           +G++AG GGDGE + V
Sbjct: 295 KGLAAGGGGDGEGVGV 310


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,485
Number of Sequences: 37544
Number of extensions: 92196
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 187
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)