GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001453-TA|BGIBMGA001453-PA|undefined
         (77 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)                       29   0.40 
SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)           28   0.93 
SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   1.6  
SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62)                    27   2.8  
SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.9  
SB_5443| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.9  
SB_17403| Best HMM Match : I-set (HMM E-Value=0)                       26   4.9  
SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.5  

>SB_15006| Best HMM Match : Stig1 (HMM E-Value=2)
          Length = 991

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 16/64 (25%)

Query: 10  SAGEGGDGEDLSVT--TTVDYSNV-----------TGTTESVGQPYFDNSTKRDYTAAVG 56
           S  + G G D+ +T   + D+SNV            G+ ES G   +D   KR Y A+VG
Sbjct: 364 STSKDGSGRDIIITGSQSYDHSNVYKYDKYLNGSERGSLESKGSESYD---KRLYKASVG 420

Query: 57  QPAY 60
           +PAY
Sbjct: 421 EPAY 424


>SB_46756| Best HMM Match : zf-C2H2 (HMM E-Value=4.60046e-42)
          Length = 1078

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 2   DIWNDRGISAGEGGDGEDLSVT-TTVDYSNVT 32
           ++ N  G + G GGDG++   T T++D   VT
Sbjct: 255 EVLNGNGSNGGNGGDGDETQTTDTSLDSQQVT 286


>SB_14894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1052

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 37  SVGQPYFDNSTKRDYTAAVGQPAYLHCRVKNL 68
           S+ QP F  + K  Y   +G+ A L CR   +
Sbjct: 245 SLSQPKFTKAVKSSYQVKLGESARLKCRASGV 276


>SB_55724| Best HMM Match : SURF6 (HMM E-Value=0.62)
          Length = 1105

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 4   WNDRGISAGEGGD-GEDLSVTTTVDYSNVTGTTESVGQPYFDN 45
           + D G ++  GG  G  +S T+T+D    TGT  +    +F +
Sbjct: 920 FEDEGSASINGGSSGSGISATSTIDLKKYTGTPIARNGEFFSS 962


>SB_22342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 15  GDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTK 48
           G+  DL+    VD++      ES+G P+ + S K
Sbjct: 141 GNKCDLTTKKVVDFTTAKEYAESLGVPFLETSAK 174


>SB_5443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 27  DYSNVTGTTESVGQPYFDNSTKRDYTAAV--GQPAYLHCRVKNLADRAAQ 74
           DY ++     SVG  +  +    D   A+  G PAYL+  ++ +AD A +
Sbjct: 144 DYKDIHELMSSVGYCFEVDEDLMDVMTALTGGGPAYLYLAIEAMADGAVR 193


>SB_17403| Best HMM Match : I-set (HMM E-Value=0)
          Length = 671

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 26  VDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLHC 63
           +D S+ T T E +  P  D    R  T   GQPA ++C
Sbjct: 400 LDASSTT-TVEVLVSPVIDVIQPRSQTVIEGQPASMYC 436


>SB_15224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1060

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 16  DGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAV 55
           DG    ++TTV    ++GT  S G P+F     R+   A+
Sbjct: 493 DGLMSDISTTVPSDFLSGTRRSAGVPFFVQVHSRNIIRAL 532


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,697
Number of Sequences: 59808
Number of extensions: 97275
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 8
length of query: 77
length of database: 16,821,457
effective HSP length: 55
effective length of query: 22
effective length of database: 13,532,017
effective search space: 297704374
effective search space used: 297704374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)