GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001453-TA|BGIBMGA001453-PA|undefined
         (77 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024810-11|AAK68516.2|  165|Caenorhabditis elegans Hypothetical...    28   0.91 
Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    26   2.8  
Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical pr...    26   3.7  
Z73103-10|CAA97427.2|  205|Caenorhabditis elegans Hypothetical p...    26   3.7  
Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical pr...    26   3.7  
AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans alkyl-dihydro...    25   4.8  
AC024801-10|AAK68514.1|  597|Caenorhabditis elegans Alkyl-dihydr...    25   4.8  
Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical pr...    25   6.4  
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical pr...    25   8.4  
Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical pr...    25   8.4  
AL023843-1|CAA19522.2|  260|Caenorhabditis elegans Hypothetical ...    25   8.4  
AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin pr...    25   8.4  

>AC024810-11|AAK68516.2|  165|Caenorhabditis elegans Hypothetical
          protein Y54E10A.17 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 2  DIWNDRGISAGEGGDGEDLSVTT--TVDY--SNVTGTTESVGQPYFDNS 46
          ++ N+   + G G D  DL V     VD+  S VTGTT+  G P  D S
Sbjct: 49 NVGNNEWSAVGFGPDMSDLIVVIFQVVDFKPSLVTGTTQGYGAPALDAS 97


>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 5   NDRGISAGEGGDGEDLSVTTTVDYSNVTG 33
           + R  + G GG GE L++++ VD S   G
Sbjct: 207 SSRSSTRGGGGGGESLTISSRVDTSGCRG 235


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 5   NDRGISAGEGGDGEDLSVTTTVDYSNVTG 33
           + R  + G GG GE L++++ VD S   G
Sbjct: 315 SSRSSTRGGGGGGESLTISSRVDTSGCRG 343


>Z81123-4|CAB03367.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 21  SVTTTVDYSNVTGTTES-VGQPYFDNSTKRDYTAAVGQPAYLHCRVKNL 68
           S T+T  YS +   + S + +P +  S     +    +PA + CRV+NL
Sbjct: 937 SYTSTSSYSLMNARSSSNIRRPGYGLSHVSSLSTFERKPAQMSCRVRNL 985


>Z73103-10|CAA97427.2|  205|Caenorhabditis elegans Hypothetical
           protein C08F8.7 protein.
          Length = 205

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 15  GDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTK 48
           G+  DL+ T  VD S      E +  PYF+ S +
Sbjct: 114 GNKSDLAETRQVDESEAHNFAEKLKIPYFETSAR 147


>Z54281-8|CAA91051.2|  986|Caenorhabditis elegans Hypothetical
           protein F46C5.6 protein.
          Length = 986

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 21  SVTTTVDYSNVTGTTES-VGQPYFDNSTKRDYTAAVGQPAYLHCRVKNL 68
           S T+T  YS +   + S + +P +  S     +    +PA + CRV+NL
Sbjct: 937 SYTSTSSYSLMNARSSSNIRRPGYGLSHVSSLSTFERKPAQMSCRVRNL 985


>AJ002686-1|CAA05690.1|  597|Caenorhabditis elegans
          alkyl-dihydroxyacetonephosphatesynthase protein.
          Length = 597

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 4  WNDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDN 45
          WN  G S  +    +D  VT T D   ++G      +P+F+N
Sbjct: 23 WNGWGYSDSQFAINKDGHVTFTGDKYEISGKVMPHFRPWFEN 64


>AC024801-10|AAK68514.1|  597|Caenorhabditis elegans
          Alkyl-dihydroxyacetonephosphatesynthase protein 1
          protein.
          Length = 597

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 4  WNDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDN 45
          WN  G S  +    +D  VT T D   ++G      +P+F+N
Sbjct: 23 WNGWGYSDSQFAINKDGHVTFTGDKYEISGKVMPHFRPWFEN 64


>Z99280-3|CAE18018.1|  215|Caenorhabditis elegans Hypothetical
          protein Y57G11B.7 protein.
          Length = 215

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 1/21 (4%)

Query: 56 GQPAYLHCRVKNLADRAAQGF 76
          G P +LHC +KNL  R AQ +
Sbjct: 24 GIPNHLHCSIKNLT-RDAQNY 43


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/37 (32%), Positives = 17/37 (45%)

Query: 23  TTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPA 59
           TTTV YS  T TT       + ++T  D  +    P+
Sbjct: 245 TTTVSYSTSTITTPQEDDSEYSSTTSADVISTTTTPS 281


>Z47070-8|CAA87345.1| 5198|Caenorhabditis elegans Hypothetical
           protein F15G9.4b protein.
          Length = 5198

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3   IWNDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLH 62
           +W    +S  + G+ E   ++   +YS  T        P       R+ +  +G+ A+LH
Sbjct: 483 VWTIPELSLKDAGEYECRVISNNGNYSVKTRVETRESPPEIFGV--RNVSVPLGEAAFLH 540

Query: 63  CRVKNLAD 70
           C  ++  +
Sbjct: 541 CSTRSAGE 548


>Z47070-7|CAA87344.1| 5175|Caenorhabditis elegans Hypothetical
           protein F15G9.4a protein.
          Length = 5175

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3   IWNDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLH 62
           +W    +S  + G+ E   ++   +YS  T        P       R+ +  +G+ A+LH
Sbjct: 483 VWTIPELSLKDAGEYECRVISNNGNYSVKTRVETRESPPEIFGV--RNVSVPLGEAAFLH 540

Query: 63  CRVKNLAD 70
           C  ++  +
Sbjct: 541 CSTRSAGE 548


>Z47068-9|CAA87336.1| 5198|Caenorhabditis elegans Hypothetical
           protein F15G9.4b protein.
          Length = 5198

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3   IWNDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLH 62
           +W    +S  + G+ E   ++   +YS  T        P       R+ +  +G+ A+LH
Sbjct: 483 VWTIPELSLKDAGEYECRVISNNGNYSVKTRVETRESPPEIFGV--RNVSVPLGEAAFLH 540

Query: 63  CRVKNLAD 70
           C  ++  +
Sbjct: 541 CSTRSAGE 548


>Z47068-8|CAA87335.1| 5175|Caenorhabditis elegans Hypothetical
           protein F15G9.4a protein.
          Length = 5175

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3   IWNDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLH 62
           +W    +S  + G+ E   ++   +YS  T        P       R+ +  +G+ A+LH
Sbjct: 483 VWTIPELSLKDAGEYECRVISNNGNYSVKTRVETRESPPEIFGV--RNVSVPLGEAAFLH 540

Query: 63  CRVKNLAD 70
           C  ++  +
Sbjct: 541 CSTRSAGE 548


>AL023843-1|CAA19522.2|  260|Caenorhabditis elegans Hypothetical
           protein Y48A6A.1 protein.
          Length = 260

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 21  SVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAA----VGQPAYLHCRVKNL 68
           +VT      ++TGT +S+ QP        D+T +     G  A L CRV+ +
Sbjct: 141 TVTINKAPKSITGTCKSIRQPLESPPIVSDFTLSRIELPGGVAQLACRVRGV 192


>AF074901-1|AAC26792.1| 5198|Caenorhabditis elegans hemicentin
           precursor protein.
          Length = 5198

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 3   IWNDRGISAGEGGDGEDLSVTTTVDYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLH 62
           +W    +S  + G+ E   ++   +YS  T        P       R+ +  +G+ A+LH
Sbjct: 483 VWTIPELSLKDAGEYECRVISNNGNYSVKTRVETRESPPEIFGV--RNVSVPLGEAAFLH 540

Query: 63  CRVKNLAD 70
           C  ++  +
Sbjct: 541 CSTRSAGE 548


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,955,918
Number of Sequences: 27539
Number of extensions: 70322
Number of successful extensions: 162
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 151
Number of HSP's gapped (non-prelim): 21
length of query: 77
length of database: 12,573,161
effective HSP length: 57
effective length of query: 20
effective length of database: 11,003,438
effective search space: 220068760
effective search space used: 220068760
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)