GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001453-TA|BGIBMGA001453-PA|undefined
         (77 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   0.25 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   0.58 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   1.8  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.1  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    19   7.1  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 0.25
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 42  YFDNSTKRDYTAAVGQP-AYLHCR 64
           +FD+ T R YTA V +   YLH R
Sbjct: 462 HFDDGTTRFYTACVVEAFDYLHSR 485


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 0.58
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 12  GEGGDGEDLSVTTTVDYSN 30
           GEG  G+DLS     DY++
Sbjct: 188 GEGSSGDDLSSEWDSDYTD 206


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 1.0
 Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 41  PYFDNSTKRDYTAAVGQPAYLHCRVK 66
           P+F+   K   TA  G+PA L C  +
Sbjct: 777 PHFEIKLKNQ-TARRGEPAVLQCEAQ 801


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.0 bits (42), Expect = 1.8
 Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 27  DYSNVTGTTESVGQPYFDNSTKRDYTAAVGQPAYLHCRVKNLAD 70
           ++ N++   + +   YF NS  +D+   + Q     C V +L+D
Sbjct: 111 NFRNISEKYQEIFNGYFLNSESKDFIDFI-QKNLQCCGVHSLSD 153


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 30  NVTGTTESVGQP 41
           N+T  TE+ G+P
Sbjct: 539 NLTSRTETTGEP 550


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 19.0 bits (37), Expect = 7.1
 Identities = 6/12 (50%), Positives = 9/12 (75%)

Query: 30  NVTGTTESVGQP 41
           N+T  TE+ G+P
Sbjct: 539 NLTSRTETTGEP 550


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.131    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,223
Number of Sequences: 429
Number of extensions: 738
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 77
length of database: 140,377
effective HSP length: 46
effective length of query: 31
effective length of database: 120,643
effective search space:  3739933
effective search space used:  3739933
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.1 bits)
S2: 36 (18.6 bits)