GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001452-TA|BGIBMGA001452-PA|undefined
         (264 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.23 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.70 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.70 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.70 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 15/49 (30%), Positives = 19/49 (38%)

Query: 124 HETKITQSKTETIPPATKDATATTSRPTKHYTIRTIVRTTETPTVQDAD 172
           HE     +   TI   T   T TT+  T   T +    TT  P V + D
Sbjct: 649 HEPGAPATTITTITTTTTTTTTTTTTTTTPNTTQNASATTPPPQVDEVD 697



 Score = 24.6 bits (51), Expect = 0.92
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 170 DADTTLNTDST-ETVSADTAGITVDGPKVTASTANIADETRSTDAGTASTVTLDSTTQTE 228
           DA T     +T  T +   A  T  GP   ++    ++ T +   GT +  T     + +
Sbjct: 212 DASTPATVTTTGATTTLPAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRRLRKRRQ 271

Query: 229 TTIEPADSRE 238
              E AD R+
Sbjct: 272 NDGEGADDRD 281



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 6/39 (15%)

Query: 206 DETR--STDAGTASTVTLDSTTQTETTIEPADSREGYLP 242
           DE++  STDA T +TVT   TT   TT+ PA S  G  P
Sbjct: 204 DESKAGSTDASTPATVT---TTGATTTL-PAASATGTGP 238


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 19/89 (21%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 142 DATATTSRPTKHYTIRTIVRTTETPTVQDADTTLNTDSTETVSADTAGITVDGPKVTAST 201
           D   TT +      + T + T  T  +  + TT+   S    S     ITV+   +    
Sbjct: 821 DHCVTTEQSVVVTNVTTTINTPTTSVISMSGTTVPITSLPASSTSINSITVEKDVINDVK 880

Query: 202 ANIADET---RSTDAGTASTVTLDSTTQT 227
             I   T   ++T+ G      + S+ Q+
Sbjct: 881 TQITTNTPAKKATNIGGKPVAVVKSSAQS 909


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 128  ITQSKTETIPPATKDATATTSRPTKHYTIRTIVRTTETPTVQDADTTLNTD 178
            I Q +  T PP    A     +P   YTIR I       +V  A+  + T+
Sbjct: 952  IWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGRSVPSAELIVRTE 1002


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.0 bits (52), Expect = 0.70
 Identities = 15/51 (29%), Positives = 21/51 (41%)

Query: 128 ITQSKTETIPPATKDATATTSRPTKHYTIRTIVRTTETPTVQDADTTLNTD 178
           I Q +  T PP    A     +P   YTIR I       +V  A+  + T+
Sbjct: 948 IWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEGPAGRSVPSAELIVRTE 998


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.304    0.119    0.330 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,877
Number of Sequences: 429
Number of extensions: 1816
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 264
length of database: 140,377
effective HSP length: 57
effective length of query: 207
effective length of database: 115,924
effective search space: 23996268
effective search space used: 23996268
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)
S2: 43 (21.4 bits)