GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001451-TA|BGIBMGA001451-PA|undefined
         (84 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    26   0.82 
SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces ...    23   5.8  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    23   5.8  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    23   7.7  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 0.82
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 12  AFCGVRSVIRTPLEAFRPSAEIHIRRP 38
           AF  +RS+  TPLE   P A +++  P
Sbjct: 510 AFSDIRSMPATPLELATPFANLNVSSP 536


>SPAC10F6.06 |vip1||RNA-binding protein Vip1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 257

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 13/61 (21%), Positives = 24/61 (39%)

Query: 12 AFCGVRSVIRTPLEAFRPSAEIHIRRPDKXXXXXXXXXXXXXMSGIKILYQTGASGRSSE 71
          +FCG  S I T       +A+I   RP                + I+I  + G +  +++
Sbjct: 24 SFCGKVSNISTEKSGETQTAKIQFERPSATKTALLLQDALLGQNKIQITSEDGGAASTTD 83

Query: 72 R 72
          +
Sbjct: 84 Q 84


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 13/48 (27%), Positives = 19/48 (39%)

Query: 31  AEIHIRRPDKXXXXXXXXXXXXXMSGIKILYQTGASGRSSERITKVSN 78
           AE+H R   K             ++ I IL  + A+ R  E I  + N
Sbjct: 389 AEVHYRETAKNFSFRTDTFIISTLNLINILEDSAAASRCLESIEPLCN 436


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 22.6 bits (46), Expect = 7.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)

Query: 17  RSVIRTPLEAFRPSAEIHIRRPDK 40
           R+++    + F P+A+ H+ RP K
Sbjct: 102 RTILPEDYKKFYPNAKTHMGRPQK 125


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,319
Number of Sequences: 5004
Number of extensions: 5289
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 84
length of database: 2,362,478
effective HSP length: 60
effective length of query: 24
effective length of database: 2,062,238
effective search space: 49493712
effective search space used: 49493712
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 46 (22.6 bits)