GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001451-TA|BGIBMGA001451-PA|undefined
         (84 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0052 - 14456925-14457176,14457277-14457437,14457843-144579...    25   5.7  
04_04_0273 - 24076664-24077701                                         25   7.6  

>02_03_0052 -
           14456925-14457176,14457277-14457437,14457843-14457914,
           14458105-14458221,14458310-14458322,14458917-14458946,
           14459837-14460010,14460276-14460417,14460731-14460792,
           14461047-14461643
          Length = 539

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 2   QMLASLILACAFCGVRSVIRTPL 24
           Q L  ++L   FC ++SV++ PL
Sbjct: 320 QSLIGMVLVTTFCYLKSVVQVPL 342


>04_04_0273 - 24076664-24077701
          Length = 345

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 7   LILACAFCGVRSVIRTPLEA--FRPSAEIHIR 36
           L+LACA   VR+V+   LE    RP    H+R
Sbjct: 160 LVLACAAAAVRAVMGMDLEPQFDRPYLSAHLR 191


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,013
Number of Sequences: 37544
Number of extensions: 39201
Number of successful extensions: 66
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 2
length of query: 84
length of database: 14,793,348
effective HSP length: 63
effective length of query: 21
effective length of database: 12,428,076
effective search space: 260989596
effective search space used: 260989596
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)