GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001451-TA|BGIBMGA001451-PA|undefined
         (84 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094937-1|AAM11290.1|  394|Drosophila melanogaster RH54416p pro...    28   1.8  
D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine rece...    25   9.4  
D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine rece...    25   9.4  
D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine rece...    25   9.4  
D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine rece...    25   9.4  
AE013599-723|AAM71084.1| 5113|Drosophila melanogaster CG10844-PD...    25   9.4  
AE013599-722|AAM71083.1| 5127|Drosophila melanogaster CG10844-PC...    25   9.4  
AE013599-721|AAM71082.1| 5113|Drosophila melanogaster CG10844-PB...    25   9.4  
AE013599-720|AAF59036.2| 5127|Drosophila melanogaster CG10844-PA...    25   9.4  

>AY094937-1|AAM11290.1|  394|Drosophila melanogaster RH54416p
           protein.
          Length = 394

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 1   MQMLASLILACAFCGVRSVIRTPLEAFRPSAEI 33
           MQ LA+++LA ++ GV S +  P EA    AE+
Sbjct: 308 MQALAAVVLAASW-GVCSAVEIPTEALSKEAEV 339


>D17389-4|BAA04212.1| 5112|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5112

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3127 MVASIFCKLAALLRNRLSAFGPDVRITVR 3155


>D17389-3|BAA41471.1| 5112|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5112

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3127 MVASIFCKLAALLRNRLSAFGPDVRITVR 3155


>D17389-2|BAA41470.1| 5126|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5126

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3141 MVASIFCKLAALLRNRLSAFGPDVRITVR 3169


>D17389-1|BAA41469.1| 5126|Drosophila melanogaster ryanodine receptor
            homologue protein.
          Length = 5126

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3141 MVASIFCKLAALLRNRLSAFGPDVRITVR 3169


>AE013599-723|AAM71084.1| 5113|Drosophila melanogaster CG10844-PD,
            isoform D protein.
          Length = 5113

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3128 MVASIFCKLAALLRNRLSAFGPDVRITVR 3156


>AE013599-722|AAM71083.1| 5127|Drosophila melanogaster CG10844-PC,
            isoform C protein.
          Length = 5127

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3142 MVASIFCKLAALLRNRLSAFGPDVRITVR 3170


>AE013599-721|AAM71082.1| 5113|Drosophila melanogaster CG10844-PB,
            isoform B protein.
          Length = 5113

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3128 MVASIFCKLAALLRNRLSAFGPDVRITVR 3156


>AE013599-720|AAF59036.2| 5127|Drosophila melanogaster CG10844-PA,
            isoform A protein.
          Length = 5127

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 8    ILACAFCGVRSVIRTPLEAFRPSAEIHIR 36
            ++A  FC + +++R  L AF P   I +R
Sbjct: 3142 MVASIFCKLAALLRNRLSAFGPDVRITVR 3170


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.323    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,700,738
Number of Sequences: 52641
Number of extensions: 62500
Number of successful extensions: 168
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 9
length of query: 84
length of database: 24,830,863
effective HSP length: 64
effective length of query: 20
effective length of database: 21,461,839
effective search space: 429236780
effective search space used: 429236780
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)