GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001451-TA|BGIBMGA001451-PA|undefined
         (84 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR ...    25   6.2  
At3g18640.1 68416.m02368 zinc finger protein-related contains si...    25   6.2  
At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Hom...    25   8.3  

>At3g46710.1 68416.m05071 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 847

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 54  MSGIKILYQTGASGRSSERITKVSNV 79
           +S ++ L    ASG S ER+T +SN+
Sbjct: 607 ISNLRFLQTLDASGNSFERMTDLSNL 632


>At3g18640.1 68416.m02368 zinc finger protein-related contains
           similarity to zinc finger proteins (CCCH type)
          Length = 676

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 63  TGASGRSSERITKVSNVDRVQE 84
           TGA G  +   +K+SNV+ +QE
Sbjct: 514 TGAEGVPAVTASKISNVEEIQE 535


>At4g38760.1 68417.m05489 hypothetical protein KIAA0169 gene, Homo
           sapiens, D79991
          Length = 561

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)

Query: 15  GVRSVIRTPLEAFRPSAEIHIRRPD 39
           G RSV+RT + AF  S EI+++  D
Sbjct: 296 GHRSVVRTFISAFIASYEINLQLED 320


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.134    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,290,243
Number of Sequences: 28952
Number of extensions: 28701
Number of successful extensions: 53
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 3
length of query: 84
length of database: 12,070,560
effective HSP length: 63
effective length of query: 21
effective length of database: 10,246,584
effective search space: 215178264
effective search space used: 215178264
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)