GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001450-TA|BGIBMGA001450-PA|IPR004182|GRAM
         (374 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...   109   8e-25
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   5.7  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   7.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   9.9  

>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score =  109 bits (261), Expect = 8e-25
 Identities = 67/240 (27%), Positives = 121/240 (50%), Gaps = 8/240 (3%)

Query: 26  SAPSVRVSALGSVSGNDETKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCALVGDLLL 85
           +APS +VS   S   +         +  R + F R F  + PE+ +++ Y CAL  D+ L
Sbjct: 167 TAPSRKVSITSSNGVSARLSGYAFANSKRNRDFHRIFKVLPPEDHLIDDYGCALQRDIFL 226

Query: 86  QGHLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRDERHVFGS 145
            G +Y+++++  F S++FG+VT ++IP T ++ + K+  A + PNA+ + T   R++F S
Sbjct: 227 HGRMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHARYIFAS 286

Query: 146 LLSRDSTYKLMMHVWKTARTPELAVPKAQLYGNVVRCCPQLVVSSFHDTLLLKDPRASE- 204
            +SRD+TY+L++ +WK   T       A  +G V+         S + ++       SE 
Sbjct: 287 FISRDTTYQLIIAIWK--NTHPFLTTLANGHG-VMDASGNHHSGSSNQSINADSSAGSEG 343

Query: 205 VD----FEASEYSPEDDSSSAGGDQVDAPAAVRRESETILPTGAAVIQPALLTGSSTPKR 260
           VD     EA++ S EDD      D+ +  A      E+    G++     +L+  ++ K+
Sbjct: 344 VDEGTSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNSVKK 403


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 44  TKDSKQPSKARQKKFQRHFPQVGPEEK 70
           TKD+  P+  + K ++R+     PEEK
Sbjct: 336 TKDACMPNYTKLKAYERNMTDASPEEK 362


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 198 KDPRASEVDFEASEYSPEDDSSSA 221
           + P ASE+D   SE+   DD SS+
Sbjct: 946 RTPDASEIDEHISEHEENDDESSS 969


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 154 KLMMH-VWKTARTPELAVPKAQLYGNVVRCCPQLVV 188
           KL++H VWK+A    L   K Q +G+VV+   Q ++
Sbjct: 393 KLLLHFVWKSALICVLCERKFQSWGHVVKHITQSIM 428


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,533,766
Number of Sequences: 5004
Number of extensions: 57859
Number of successful extensions: 171
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 4
length of query: 374
length of database: 2,362,478
effective HSP length: 74
effective length of query: 300
effective length of database: 1,992,182
effective search space: 597654600
effective search space used: 597654600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)