Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001450-TA|BGIBMGA001450-PA|IPR004182|GRAM
(374 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0442 + 18261928-18261957,18264217-18264279,18264847-182648... 95 1e-19
09_04_0741 - 19852339-19852497,19853185-19853246,19853352-198534... 46 4e-05
06_02_0041 + 10889741-10890092,10890161-10890235,10891139-108923... 45 1e-04
08_02_1102 + 24319569-24319917,24320120-24321496,24321819-243220... 39 0.007
07_01_0353 + 2563807-2564496,2564595-2564660,2564853-2564918,256... 33 0.28
08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831 30 2.6
06_03_0712 + 23803597-23803945,23804118-23805479,23805743-238058... 30 2.6
05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428... 30 3.5
06_03_0502 + 21493442-21494341 29 4.6
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661... 29 4.6
04_03_1000 + 21604164-21605387,21605467-21605817 29 4.6
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 29 4.6
03_01_0107 + 849489-850652,850745-850835,850926-851083,851180-85... 29 8.0
>07_03_0442 +
18261928-18261957,18264217-18264279,18264847-18264897,
18265937-18266002,18266813-18266908,18266985-18267086,
18267200-18267297,18267409-18267581,18267695-18267735,
18267823-18267910,18268025-18268084,18268206-18268260,
18268617-18268683,18269260-18269356,18269659-18269720,
18269808-18269850,18270002-18270111,18270477-18270713
Length = 512
Score = 94.7 bits (225), Expect = 1e-19
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 43 ETKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCALVGDLLLQGHLYITKNYFAFYSNV 102
E P A + + R ++ P+E ++ ++CAL ++LLQGH+Y+ ++ FYSN+
Sbjct: 5 ENNGDMSPLLASRSEEYRLLFRLPPDEVLVQDFNCALQENILLQGHMYLFLHHICFYSNI 64
Query: 103 FGYVTKLLIPTTSVLRITKEKVARIIPNAVGVCTRDERHVFGSLLSRDSTYKLMMHVWK 161
FGY TK IP V + K K A I NA+ + +RH FGS LSRD +++++ W+
Sbjct: 65 FGYETKKTIPLQEVTDVRKAKTAAIFHNAIEIIAGTKRHFFGSFLSRDEAFRIIVEGWE 123
>09_04_0741 -
19852339-19852497,19853185-19853246,19853352-19853415,
19853561-19853614,19853744-19853890,19854460-19854564,
19854651-19854794,19854987-19855093,19855613-19855712,
19855804-19855833,19856492-19856608,19856705-19856828,
19857143-19857189,19857272-19857400,19857777-19857852,
19858446-19858543,19858630-19858671,19858811-19859044
Length = 612
Score = 46.4 bits (105), Expect = 4e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 67 PEEKVLNYYSCALVGDLLLQGHLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVAR 126
P+E V + YSCAL L G +Y++ + F+SNVF K+++P + I + + A
Sbjct: 248 PDEVVEHSYSCALERSFLYHGRMYVSSWHICFHSNVFSKQIKVMLPLRDIDEIRRSQHAV 307
Query: 127 IIP 129
I P
Sbjct: 308 INP 310
>06_02_0041 +
10889741-10890092,10890161-10890235,10891139-10892341,
10892970-10893253,10893343-10893459,10894126-10894388,
10894557-10894725,10894838-10895110,10895674-10895718,
10896472-10896591,10896926-10896987,10897296-10897318,
10897911-10898128
Length = 1067
Score = 44.8 bits (101), Expect = 1e-04
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 58 FQRHFPQVGPEEKVLNYYSCALVGDLLLQGHLYITKNYFAFYSNVFGYVTK 108
FQ+ F + PEE ++N ++C L +L QG L+++ FY+N+FG+ TK
Sbjct: 650 FQKIF-SLPPEEFLINDFTCHLKRKMLTQGRLFLSPRIIGFYTNLFGHKTK 699
>08_02_1102 +
24319569-24319917,24320120-24321496,24321819-24322001,
24322147-24322460,24322515-24322631,24323057-24323313,
24323504-24323684,24323802-24324074,24324535-24324729
Length = 1081
Score = 38.7 bits (86), Expect = 0.007
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 44 TKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCALVGDLLLQGHLYITKNYFAFYSNVF 103
+K+ S FQ F + EE +++ ++C L L QGHL+++ FYS++F
Sbjct: 739 SKEMTLRSPRTNTAFQELF-SLPAEEFLISSFTCCLKRKLHTQGHLFLSPRTIGFYSSMF 797
Query: 104 GYVTK 108
G TK
Sbjct: 798 GRKTK 802
>07_01_0353 +
2563807-2564496,2564595-2564660,2564853-2564918,
2565044-2565115,2565196-2565261,2565355-2565417,
2565505-2565570,2565963-2566062,2567403-2567504,
2567772-2567995,2568200-2568314,2568653-2568763,
2568873-2569088,2569426-2569624,2570690-2570790,
2570872-2570919,2571052-2571236,2571345-2571462,
2571572-2571699,2571981-2572107,2572529-2572647,
2572770-2572938,2573078-2573162,2573247-2573320,
2573449-2573568,2574068-2574251,2574343-2574464,
2574548-2574755,2574885-2574958,2575047-2575185,
2575275-2575456,2575852-2576007,2576153-2576284,
2576508-2576566,2576913-2576945,2577065-2577196,
2577303-2577479
Length = 1675
Score = 33.5 bits (73), Expect = 0.28
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 123 KVARIIPNAVGVCTRDERHVFGSLLSRDSTYKLMMHVWKTARTPELAVPKAQL 175
+VA+ P +C RD L+ DST+ ++ WK +L V KA +
Sbjct: 404 EVAKQYPAHTAICIRDGWEFCSPELAADSTFSFLLEQWKNKLPQDLIVKKAHV 456
>08_01_0442 + 3922402-3922707,3922940-3923816,3925741-3926831
Length = 757
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 206 DFEASEYSPEDDSSSAGGDQVDAPAAVRRESETILPTGAAVIQPALLTGSSTPKRRATH 264
DF + + SSS+ ++P A S + +GAA++ P T SS P + H
Sbjct: 35 DFSSPPSTTSSSSSSSSSSSTNSPTATAASSSSTNTSGAAIVHP---TTSSHPSVASGH 90
>06_03_0712 +
23803597-23803945,23804118-23805479,23805743-23805811,
23806050-23806330,23806817-23807076,23807521-23807689,
23807796-23808068,23808251-23808499
Length = 1003
Score = 30.3 bits (65), Expect = 2.6
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 69 EKVLNYYSCALVGDLLLQGHLYITKNYFAFYSNVFGYVTK 108
E V+NY + + ++ +G L+ + FYSN+FG+ TK
Sbjct: 671 EVVMNYLA-KMRKEVGKKGRLFFSPRIIGFYSNIFGHKTK 709
>05_03_0627 -
16342211-16342264,16342332-16342412,16342751-16342849,
16343660-16343770,16343964-16344116,16344741-16344881,
16345456-16345513,16345852-16345967,16346292-16346405,
16346496-16346557,16348788-16348930,16349030-16349097,
16349200-16349379,16349835-16350013,16350447-16350636,
16350920-16350978,16351421-16351574,16352133-16352158,
16352567-16353014
Length = 811
Score = 29.9 bits (64), Expect = 3.5
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 20 VKPLSGSAPSVRVSALGSVSGNDETKDSKQPS 51
+KP S +P SA SV G+DE D+KQP+
Sbjct: 179 IKPNSPKSPVASASAFESVEGSDE-DDAKQPN 209
>06_03_0502 + 21493442-21494341
Length = 299
Score = 29.5 bits (63), Expect = 4.6
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 198 KDPRASEVDFEASEYSPE--DDSSSAGGDQVDAPA 230
+DP E D EA + PE DD + G +VDA A
Sbjct: 223 EDPEPEEFDDEADDDEPEMDDDDADVGAGEVDARA 257
>06_01_0868 -
6606913-6607000,6607516-6608010,6610313-6610761,
6610863-6610979,6611892-6612863
Length = 706
Score = 29.5 bits (63), Expect = 4.6
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 189 SSFHDTLLLKDPRASEVDFEASEYSPEDDSSSAGGDQVDAPAAVRRESETILPTGAA--V 246
+S T L +A A+ S +AGG+ +PAA S T+ AA +
Sbjct: 104 ASVKKTSRLNKVKAKAKAAAAAAASGSPSVGAAGGNADASPAAPAPRSATVADGSAARVI 163
Query: 247 IQPALLTG-SSTPKRR 261
PA T +STPKRR
Sbjct: 164 STPAAATAEASTPKRR 179
>04_03_1000 + 21604164-21605387,21605467-21605817
Length = 524
Score = 29.5 bits (63), Expect = 4.6
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 195 LLLKDPRASEVDFEASEYSPEDDSSSAGGDQVDAP----AAVRRESETILPTGAA 245
+LL +P+A++V FE + E+ D VD P AA + T +PT AA
Sbjct: 399 MLLLEPKATKVMFERMKVEKEEGRGRDMADIVDPPTVTVAAGNTATTTTVPTAAA 453
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 29.5 bits (63), Expect = 4.6
Identities = 19/72 (26%), Positives = 30/72 (41%)
Query: 179 VVRCCPQLVVSSFHDTLLLKDPRASEVDFEASEYSPEDDSSSAGGDQVDAPAAVRRESET 238
+V P++ SF +P A+ AS+ + D SS+ GD AP R+
Sbjct: 10 LVPLLPRISARSFSAASPASEPAAAAAAVAASDAAAATDYSSSAGDPSSAPPPPARKPLG 69
Query: 239 ILPTGAAVIQPA 250
+L G + A
Sbjct: 70 LLKGGVLAVVAA 81
>03_01_0107 +
849489-850652,850745-850835,850926-851083,851180-851231,
852373-852452,852540-852633,852711-853231,854087-854202,
854242-854293
Length = 775
Score = 28.7 bits (61), Expect = 8.0
Identities = 12/70 (17%), Positives = 32/70 (45%)
Query: 8 RCQGISWARRQAVKPLSGSAPSVRVSALGSVSGNDETKDSKQPSKARQKKFQRHFPQVGP 67
RCQ + WA + + P + + +G+++GN D+ + + + + + P
Sbjct: 448 RCQVVDWADTKEIITAVCYRPDGKAAVVGTITGNCRHYDASENHLELESQVALNGRKKSP 507
Query: 68 EEKVLNYYSC 77
++++ + C
Sbjct: 508 LKRIIGFQYC 517
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,205,714
Number of Sequences: 37544
Number of extensions: 386297
Number of successful extensions: 1112
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 15
length of query: 374
length of database: 14,793,348
effective HSP length: 83
effective length of query: 291
effective length of database: 11,677,196
effective search space: 3398064036
effective search space used: 3398064036
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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