GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001450-TA|BGIBMGA001450-PA|IPR004182|GRAM
         (374 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32563| Best HMM Match : GRAM (HMM E-Value=2.8e-11)                  74   2e-13
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   2e-05
SB_32756| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.004
SB_56208| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.054
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.87 
SB_15799| Best HMM Match : PH (HMM E-Value=0.76)                       31   1.5  
SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)                       31   1.5  
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)                  31   1.5  
SB_45352| Best HMM Match : PAN (HMM E-Value=0.00031)                   31   2.0  
SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)                   31   2.0  
SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_36875| Best HMM Match : TP2 (HMM E-Value=2.9)                       29   6.2  
SB_31020| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.2  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.1  

>SB_32563| Best HMM Match : GRAM (HMM E-Value=2.8e-11)
          Length = 204

 Score = 74.1 bits (174), Expect = 2e-13
 Identities = 30/66 (45%), Positives = 49/66 (74%)

Query: 75  YSCALVGDLLLQGHLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVGV 134
           +SCAL  ++LLQG +YI++++  FYSN+FG+ T++ I    VL IT+EK A ++PNA+ +
Sbjct: 139 FSCALSREILLQGRIYISQDWVCFYSNIFGWETQVTIDCRKVLSITREKTAYVVPNAILI 198

Query: 135 CTRDER 140
            T D++
Sbjct: 199 TTEDDK 204


>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1183

 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 75  YSCAL-VGDLLLQGHLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKVARIIPNAVG 133
           YSC+   G +  QG LY++ N+  FYS + G   +L+I  T V  + +   + ++P+ + 
Sbjct: 119 YSCSYWKGRVPRQGWLYLSVNHLCFYSFLMGKEARLVIRWTDVTSLERTN-SVLLPDGIK 177

Query: 134 VCTRDERHVFGSLLSRDSTYKLM 156
           V TRD    F  LL    T+ LM
Sbjct: 178 VATRDGEFCFSLLLHPTETFGLM 200



 Score = 42.7 bits (96), Expect = 5e-04
 Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 7/117 (5%)

Query: 55  QKKFQRHFPQVGPEEKVLNYYSCALVGD---LLLQGHLYITKNYFAFYSNVFGYVTKLLI 111
           Q ++ R+  ++  EEK+  +  C L        + G LY + N+  F S +   +  +++
Sbjct: 231 QSEYYRNLFRLPVEEKLDGHCECTLWSPHNKAHVWGTLYCSPNFLCFNSKI-RQLLSVVV 289

Query: 112 PTTSVLRITKEKVARIIPNAVGVCTRDERH-VFGSLLSRDSTYKLMMHVWKTARTPE 167
           P   +  + K   + +IPNA+ + TR + + +F SL  RD    L+      A+TPE
Sbjct: 290 PMREITLVEKVDTSALIPNALHITTRSKANFLFASLRDRDYLTHLISDF--LAKTPE 344


>SB_32756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 121 KEKVARIIPNAVGVCTRDERHVFGSLLSRDSTYKLMMHVWKTA 163
           K++   +  +A+ V T+D++H F SL SR +T+ ++ H WK A
Sbjct: 56  KKETTTVFYSALTVRTKDKKHWFSSLQSRTNTFNVLEHFWKEA 98


>SB_56208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 238

 Score = 35.9 bits (79), Expect = 0.054
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 108 KLLIPTTSVLRITKEKVARIIPNAVGVCTRDERHVFGSLLSRDSTYKLMMHV 159
           K+ I    VL IT+EK A ++PNA+ + T D++ V     +RD    +M H+
Sbjct: 48  KVTIDCRKVLSITREKTAYVVPNAILITTEDDK-VRDIQETRDQVIPVMDHL 98


>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 32/106 (30%), Positives = 42/106 (39%), Gaps = 14/106 (13%)

Query: 165 TPELAVPKAQLYGNVVRCCPQLVVSSFHDTLLLKDPRASEVDFEASEYSPEDDSSSAGGD 224
           T + A P    Y  V   CP       HD  L   P AS  DF +   + E   S   G+
Sbjct: 761 TFKCAEPGNCQYNTVGTFCP------IHDVSLPPTPNASNADFNSGASTSEPPVSGVSGN 814

Query: 225 QVDAPAAVR-------RESETILP-TGAAVIQPALLTGSSTPKRRA 262
            +  PA VR        E+E   P    AV   +++TGS+   R A
Sbjct: 815 SLAVPALVRATVHNGSEEAEPKAPELPGAVPSVSIVTGSACSVRPA 860


>SB_15799| Best HMM Match : PH (HMM E-Value=0.76)
          Length = 836

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/60 (25%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 17  RQAVKPLSGS-APSVRVSALGSVSGNDETKDS-KQPSKARQKKFQRHFPQVGPEEKVLNY 74
           ++A + L+ S +P++ +S+L + + +D + D  K+  +  +++FQ   P++ P  ++ NY
Sbjct: 466 QEATERLTASCSPAISLSSLLAAAKDDSSTDPVKENVEVEEEEFQDALPELSPPSRLSNY 525


>SB_9232| Best HMM Match : Coq4 (HMM E-Value=1.8)
          Length = 1392

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 344 LEALSGVIVDDLPPQDPARVVLDVPNDT 371
           L+ L   ++ DLPPQD AR+ LD P  T
Sbjct: 165 LQRLLDDVLGDLPPQDFARITLDAPGLT 192


>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
          Length = 1313

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/60 (25%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 17  RQAVKPLSGS-APSVRVSALGSVSGNDETKDS-KQPSKARQKKFQRHFPQVGPEEKVLNY 74
           ++A + L+ S +P++ +S+L + + +D + D  K+  +  +++FQ   P++ P  ++ NY
Sbjct: 340 QEATERLTASCSPAISLSSLLAAAKDDSSTDPVKENVEVEEEEFQDALPELSPPSRLSNY 399


>SB_45352| Best HMM Match : PAN (HMM E-Value=0.00031)
          Length = 332

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 142 VFGSLLSRDSTYKLMMHVWKTARTPELAVPKAQLYGNVVRCCPQLVVSSFHDTLLLKDPR 201
           +F SL+ + +T + M  V++ +  P LA P  +L G+ ++  P   + S     L   PR
Sbjct: 14  LFLSLMVQGNTKQDMHQVYRNS-IPSLAYPDKKLKGSAIKAVPSPSLVSCAQECLKLFPR 72

Query: 202 ASEVDFEASEYSPEDDSSSAGGDQVDAPAAVRRESETI 239
               ++  +    E +S    G  ++    +   S+T+
Sbjct: 73  CKSYNYITTSMICELNSIGVSGSLIEQLEQMEPASKTV 110


>SB_45350| Best HMM Match : PAN (HMM E-Value=0.00039)
          Length = 334

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 1/98 (1%)

Query: 142 VFGSLLSRDSTYKLMMHVWKTARTPELAVPKAQLYGNVVRCCPQLVVSSFHDTLLLKDPR 201
           +F SL+ + +T + M  V++ +  P LA P  +L G+ ++  P   + S     L   PR
Sbjct: 16  LFLSLMVQGNTKQDMHQVYRNS-IPSLAYPDKKLKGSTIKAVPSPSLVSCAQECLKLFPR 74

Query: 202 ASEVDFEASEYSPEDDSSSAGGDQVDAPAAVRRESETI 239
               ++  +    E +S    G  ++    +   S+T+
Sbjct: 75  CKSYNYITTSMICELNSIGVSGSLIEQLEQMEPASKTV 112


>SB_59005| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 217 DSSSAGGDQVDAPAAVRRESETILPTGAAVIQPALLTGSSTPKRRAT 263
           +  S+    V+ P++VR  SE  LP   +  +P+L T +  P  R +
Sbjct: 479 EGPSSNKTSVEWPSSVRTSSERPLPVRTSAERPSLRTSAERPSLRTS 525


>SB_36875| Best HMM Match : TP2 (HMM E-Value=2.9)
          Length = 234

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 111 IPTTSVLRITKEKVARIIPNAVGVCTRDE 139
           I  + V+ I KEK A +IPNA+ + T ++
Sbjct: 100 INCSEVISIRKEKTALVIPNAIQISTEEK 128


>SB_31020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 680

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 82  DLLLQGHLYITKNYFAFYSNVFGYVTKLLIPTTSVLRITKEKV-ARIIPNAVGVCTRDER 140
           D +L+  LY  + +   Y+N+        IP   VLR+  + + A+ +P+ V +  R+ R
Sbjct: 143 DGVLRSQLYHIRAFVLAYTNIASRRMLRRIPREDVLRVCTDAIYAKAVPSGVKLVERNPR 202

Query: 141 H 141
           +
Sbjct: 203 Y 203


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 28.7 bits (61), Expect = 8.1
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 24  SGSAPSVRVSALGSVSGNDETKDSKQPSKARQKKFQRHFPQVGPEEKVL 72
           S S+ S   SA  S+S +   K +K+    + K  +R  PQ   E +VL
Sbjct: 389 SSSSSSASTSATISISKSSADKSTKKQGHGKGKSNKRMIPQSSTESQVL 437


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,314,270
Number of Sequences: 59808
Number of extensions: 419122
Number of successful extensions: 1079
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1067
Number of HSP's gapped (non-prelim): 16
length of query: 374
length of database: 16,821,457
effective HSP length: 83
effective length of query: 291
effective length of database: 11,857,393
effective search space: 3450501363
effective search space used: 3450501363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)