GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001450-TA|BGIBMGA001450-PA|IPR004182|GRAM
         (374 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    26   1.5  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          25   2.6  
AJ000038-1|CAA03874.1|   73|Anopheles gambiae F1 protein protein.      24   7.8  

>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 26.2 bits (55), Expect = 1.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 4/63 (6%)

Query: 18  QAVKPLSGS-APSVRVSALGSVSGNDETKDSKQPSKARQKKF---QRHFPQVGPEEKVLN 73
           Q+  PL+G+ A SV  ++ G+V G  ++ D    ++ + +KF   Q+  PQ     +   
Sbjct: 68  QSYNPLAGAGATSVNSASTGAVGGGHQSTDMVDYTQLQPQKFLLSQQQQPQSALTSQSCK 127

Query: 74  YYS 76
           Y S
Sbjct: 128 YAS 130


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 21/77 (27%), Positives = 26/77 (33%)

Query: 184  PQLVVSSFHDTLLLKDPRASEVDFEASEYSPEDDSSSAGGDQVDAPAAVRRESETILPTG 243
            P + V   HD   L+   A E  F +     E D+S  GG       A      T     
Sbjct: 1068 PFVAVQRAHDNAKLQTIGAREESFSSYRSETEPDNSPMGGSPRPETPAFPVTPRTPYGLS 1127

Query: 244  AAVIQPALLTGSSTPKR 260
                 PAL   S T +R
Sbjct: 1128 NGTSSPALPPKSPTSQR 1144


>AJ000038-1|CAA03874.1|   73|Anopheles gambiae F1 protein protein.
          Length = 73

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 200 PRASEVDFEASEYSPEDDSSSAGGDQVDAPAAVRRESE 237
           P   E DF+     P   SSS  G++   P+ +   ++
Sbjct: 31  PTYDEEDFDEESLKPHSSSSSDDGEEEFDPSLLEEHAD 68


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 339,241
Number of Sequences: 2123
Number of extensions: 11796
Number of successful extensions: 19
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 17
Number of HSP's gapped (non-prelim): 3
length of query: 374
length of database: 516,269
effective HSP length: 65
effective length of query: 309
effective length of database: 378,274
effective search space: 116886666
effective search space used: 116886666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)