GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001450-TA|BGIBMGA001450-PA|IPR004182|GRAM
         (374 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical ...    68   1e-11
AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical...    61   1e-09
AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical ...    61   1e-09
AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical...    61   1e-09
AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical ...    61   1e-09
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   4.0  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical ...    28   9.3  

>AF000194-5|AAK39377.2|  616|Caenorhabditis elegans Hypothetical
           protein ZC328.3a protein.
          Length = 616

 Score = 67.7 bits (158), Expect = 1e-11
 Identities = 40/132 (30%), Positives = 73/132 (55%), Gaps = 7/132 (5%)

Query: 54  RQKKFQRHFPQVG---PEEKVLNYYSCALVGDLLLQGHLYITKNYFAFYSNVFGYVTKLL 110
           R  +F++ F   G     ++ L  YSCA   ++L QG ++I++    FY+N+ G+ T L+
Sbjct: 72  RNLQFKKIFVDKGLIEENDQFLASYSCAYQREILAQGRMFISQFNVCFYANIIGWETTLV 131

Query: 111 IPTTSVLRITKEKVARIIPNAVGVCTRD--ERHVFGSLLSRDSTYKLMMHV-WKTARTPE 167
           IP   +  + K K A I PN++ +  RD  E++ F S ++RD +Y+++     K A   E
Sbjct: 132 IPMKEISLVKKMKAAFIFPNSIQI-ERDTKEKYFFASFINRDKSYQVLTTAHQKVAGEDE 190

Query: 168 LAVPKAQLYGNV 179
            A+ + +++  V
Sbjct: 191 KAMTREEVWDMV 202


>AL021488-10|CAA16368.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 38/121 (31%), Positives = 72/121 (59%), Gaps = 7/121 (5%)

Query: 38  VSGNDETKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCAL-VGDLLLQGHLYITKNYF 96
           VS   E  DS   +++  +KF + F  + P+EK++NYY C L  G +  QG L+++ N+ 
Sbjct: 126 VSPYSEELDSVS-TRSCLEKFHKSF-SIPPDEKLVNYYKCCLWKGKVPAQGDLFLSVNFL 183

Query: 97  AFYSNVFGYVTKLLIPTTSVLRITKEKVARII-PNAVGVCTR-DERHVFGSLLSRDSTYK 154
            F++ + G  TK+ +  T ++R+  E+V+ I+ P ++ V T+ D++  F   L+ + T++
Sbjct: 184 CFHAFMMGNETKIKLKWTDIVRL--ERVSSILFPQSILVVTKEDKKFSFSMFLNFEETFQ 241

Query: 155 L 155
           L
Sbjct: 242 L 242


>AL021488-9|CAC42378.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 38/121 (31%), Positives = 72/121 (59%), Gaps = 7/121 (5%)

Query: 38  VSGNDETKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCAL-VGDLLLQGHLYITKNYF 96
           VS   E  DS   +++  +KF + F  + P+EK++NYY C L  G +  QG L+++ N+ 
Sbjct: 126 VSPYSEELDSVS-TRSCLEKFHKSF-SIPPDEKLVNYYKCCLWKGKVPAQGDLFLSVNFL 183

Query: 97  AFYSNVFGYVTKLLIPTTSVLRITKEKVARII-PNAVGVCTR-DERHVFGSLLSRDSTYK 154
            F++ + G  TK+ +  T ++R+  E+V+ I+ P ++ V T+ D++  F   L+ + T++
Sbjct: 184 CFHAFMMGNETKIKLKWTDIVRL--ERVSSILFPQSILVVTKEDKKFSFSMFLNFEETFQ 241

Query: 155 L 155
           L
Sbjct: 242 L 242


>AL021483-10|CAA16349.2| 1247|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6a protein.
          Length = 1247

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 38/121 (31%), Positives = 72/121 (59%), Gaps = 7/121 (5%)

Query: 38  VSGNDETKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCAL-VGDLLLQGHLYITKNYF 96
           VS   E  DS   +++  +KF + F  + P+EK++NYY C L  G +  QG L+++ N+ 
Sbjct: 126 VSPYSEELDSVS-TRSCLEKFHKSF-SIPPDEKLVNYYKCCLWKGKVPAQGDLFLSVNFL 183

Query: 97  AFYSNVFGYVTKLLIPTTSVLRITKEKVARII-PNAVGVCTR-DERHVFGSLLSRDSTYK 154
            F++ + G  TK+ +  T ++R+  E+V+ I+ P ++ V T+ D++  F   L+ + T++
Sbjct: 184 CFHAFMMGNETKIKLKWTDIVRL--ERVSSILFPQSILVVTKEDKKFSFSMFLNFEETFQ 241

Query: 155 L 155
           L
Sbjct: 242 L 242


>AL021483-9|CAC42374.2| 1245|Caenorhabditis elegans Hypothetical
           protein Y45F10A.6b protein.
          Length = 1245

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 38/121 (31%), Positives = 72/121 (59%), Gaps = 7/121 (5%)

Query: 38  VSGNDETKDSKQPSKARQKKFQRHFPQVGPEEKVLNYYSCAL-VGDLLLQGHLYITKNYF 96
           VS   E  DS   +++  +KF + F  + P+EK++NYY C L  G +  QG L+++ N+ 
Sbjct: 126 VSPYSEELDSVS-TRSCLEKFHKSF-SIPPDEKLVNYYKCCLWKGKVPAQGDLFLSVNFL 183

Query: 97  AFYSNVFGYVTKLLIPTTSVLRITKEKVARII-PNAVGVCTR-DERHVFGSLLSRDSTYK 154
            F++ + G  TK+ +  T ++R+  E+V+ I+ P ++ V T+ D++  F   L+ + T++
Sbjct: 184 CFHAFMMGNETKIKLKWTDIVRL--ERVSSILFPQSILVVTKEDKKFSFSMFLNFEETFQ 241

Query: 155 L 155
           L
Sbjct: 242 L 242


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical
           protein B0496.3a protein.
          Length = 1551

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 171 PKAQLYGNVV-RCCPQLVVSSFHDTLLLKDPRASEVDFEASEYSPEDDSSSAGGDQVDAP 229
           P+    G+V  R  P +VV S  D   L D    E D E  E +  ++ S     +   P
Sbjct: 840 PRNSYVGSVPPRSPPPIVVKS--DGEELDDEEEEEEDEEEIEETDSEEGSDFENFKPKRP 897

Query: 230 --AAVRRESETILPTGAAVIQPALLTGSSTPKR 260
             AAVRR+   ++P      +PA+++ +S   R
Sbjct: 898 IIAAVRRDDGAVVPVIHQTTRPAVVSPNSQNPR 930


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical
           protein B0496.3b protein.
          Length = 1592

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 171 PKAQLYGNVV-RCCPQLVVSSFHDTLLLKDPRASEVDFEASEYSPEDDSSSAGGDQVDAP 229
           P+    G+V  R  P +VV S  D   L D    E D E  E +  ++ S     +   P
Sbjct: 881 PRNSYVGSVPPRSPPPIVVKS--DGEELDDEEEEEEDEEEIEETDSEEGSDFENFKPKRP 938

Query: 230 --AAVRRESETILPTGAAVIQPALLTGSSTPKR 260
             AAVRR+   ++P      +PA+++ +S   R
Sbjct: 939 IIAAVRRDDGAVVPVIHQTTRPAVVSPNSQNPR 971


>AC024748-4|AAF60410.1|  251|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.1 protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 5/67 (7%)

Query: 198 KDPRASEVDFEASEYSPEDDSS-SAGGDQVDAPAAVRRESETILPTGAAVIQPALLTGSS 256
           + P  SE  F    +  +DD   + GGD V     +R+  + I+     +  PA  T  S
Sbjct: 168 RTPSRSEPIFLDQSFEIQDDEDLNLGGDDV----FIRQIKQEIVEEDLEIENPADATPPS 223

Query: 257 TPKRRAT 263
            P+RR+T
Sbjct: 224 PPRRRST 230


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,291,354
Number of Sequences: 27539
Number of extensions: 312194
Number of successful extensions: 901
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 900
Number of HSP's gapped (non-prelim): 8
length of query: 374
length of database: 12,573,161
effective HSP length: 83
effective length of query: 291
effective length of database: 10,287,424
effective search space: 2993640384
effective search space used: 2993640384
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)