GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001449-TA|BGIBMGA001449-PA|undefined
         (117 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    25   3.1  
SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|ch...    24   5.4  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    24   5.4  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    24   7.1  
SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyc...    24   7.1  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    24   7.1  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    24   7.1  

>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 53  LEEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVKRSLSD 93
           ++ +D P+ L    SE + T  SL   S   +P  + SLS+
Sbjct: 282 IQPSDDPLSLEVANSETVSTSNSLHDPSAEPYPVNRSSLSN 322


>SPAPB2B4.03 |cig2|cyc17|cyclin Cig2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 54  EEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVKRSLSDRFSVISDASSKKP 106
           EEAD+PVE +  K         L++ S    P V+    DR S + D  S  P
Sbjct: 86  EEADKPVESKFVKK--------LKVYSKNADPSVETLQKDRVSNVDDHLSSNP 130


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 52  HLEEADQPVELRSKKSEGLLTGKSLR-LSSGG 82
           HLEE ++    RSK+      GK+ R L+SGG
Sbjct: 399 HLEEEEKDEAERSKRKAEESDGKTTRELTSGG 430


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)

Query: 93  DRFSVISDASSKKPAK 108
           ++FS+ISDA+SK  AK
Sbjct: 386 NKFSMISDAASKSRAK 401


>SPAC1834.06c |pmo25||mo25 family protein Pmo25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 329

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 60  VELRSKKSEGLLTGKSLRLSSGGRFPEVKRSLS 92
           +E  SKK  GL+    LR     R+P V   L+
Sbjct: 86  LEFESKKDTGLIFSALLRRHVASRYPTVDYMLA 118


>SPBC2D10.11c |||nucleosome assembly protein Nap2
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 15/65 (23%), Positives = 28/65 (43%)

Query: 15 QGFGDSERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGK 74
          +G GD ++ ++       QN P +D+H  K+A   +    ++    +    +  GLL   
Sbjct: 3  KGPGDFKKSWNGFAAQTPQNTPSSDVHLSKAALEKARQTLQSQLEDKSAHDEVSGLLRNN 62

Query: 75 SLRLS 79
             LS
Sbjct: 63 PAMLS 67


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 19  DSERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLR- 77
           D   G S  ++  D ++    LH   S+  +SL   E     + R    +GL   KS+  
Sbjct: 357 DITDGVSTKKDLNDGDQNEVPLHDTGSSSSLSLLYNEDVASKKKRRVNDDGLARKKSIAG 416

Query: 78  LSSGGRFPE 86
           +S   +F E
Sbjct: 417 ISEQRKFDE 425


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 522,012
Number of Sequences: 5004
Number of extensions: 19271
Number of successful extensions: 33
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 7
length of query: 117
length of database: 2,362,478
effective HSP length: 65
effective length of query: 52
effective length of database: 2,037,218
effective search space: 105935336
effective search space used: 105935336
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)