Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001449-TA|BGIBMGA001449-PA|undefined
(117 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0019 + 40494709-40494767,40495619-40495703,40495777-404958... 34 0.033
06_03_1032 + 27029698-27029785,27030640-27031275,27031739-270319... 33 0.058
03_02_0254 + 6862762-6863663,6863994-6864241,6864323-6864465,686... 31 0.23
05_01_0515 + 4343067-4344206,4344293-4344478,4344884-4345018,434... 29 0.95
01_06_0765 - 31808775-31809443,31809547-31809703,31809777-318098... 28 1.7
04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140 27 2.9
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733... 27 5.0
04_04_1178 + 31508349-31508461,31510074-31510932 27 5.0
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 26 6.7
10_08_0393 + 17517511-17517777,17518913-17518987,17519080-175191... 26 8.8
02_03_0329 + 17806787-17807294,17819559-17819710 26 8.8
>01_07_0019 +
40494709-40494767,40495619-40495703,40495777-40495836,
40495934-40496044,40496127-40496204,40496276-40496347,
40496944-40497057,40498034-40498538,40499011-40499108,
40499185-40499215,40499346-40499520,40499849-40500008,
40501436-40501855,40502313-40503203
Length = 952
Score = 33.9 bits (74), Expect = 0.033
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 22 RGYSK-SRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKS 67
+G SK S++ + ++P +L SKK K+VS +E+D V+ +KK+
Sbjct: 279 KGVSKPSQDTEEDDEPEVELESKKVVKKVSKSSKESDVTVDKTTKKA 325
>06_03_1032 +
27029698-27029785,27030640-27031275,27031739-27031993,
27032451-27032605,27032704-27032783,27032891-27033026,
27033228-27033377,27033474-27033641
Length = 555
Score = 33.1 bits (72), Expect = 0.058
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Query: 19 DSERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVEL-RSKKSEGLLTGKSLR 77
DS+ G S EC DQ+ PR L S S +QP E + + L++G LR
Sbjct: 111 DSKAGNDDSSECTDQSSPRAVLDISVSGSVDSDESSSVEQPAESNHNTQWRNLISGLILR 170
Query: 78 ----LSSGGRFPE 86
++ G FP+
Sbjct: 171 RRKSMARAGTFPQ 183
>03_02_0254 +
6862762-6863663,6863994-6864241,6864323-6864465,
6864532-6864570,6865403-6865501
Length = 476
Score = 31.1 bits (67), Expect = 0.23
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 18 GDSERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLR 77
G +G + R P + D S +R EAD+P KK+ G L GK++R
Sbjct: 133 GSEVKGEDRRRRQPAAEEEDGDEASSGVEERSGESRPEADEPDR---KKARGTLWGKAVR 189
Query: 78 LSSGGRFPEVKRSL 91
L +F +V L
Sbjct: 190 LDEADKFYKVVEKL 203
>05_01_0515 +
4343067-4344206,4344293-4344478,4344884-4345018,
4346652-4346753,4346973-4347068,4347146-4347238,
4347351-4347470,4347580-4347612,4347699-4347749,
4347874-4347952,4348398-4348456
Length = 697
Score = 29.1 bits (62), Expect = 0.95
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 18 GDSERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQP-VELRSKK 66
GD +RG + R D+ +P+ +KK K+ LE D P ++LRS K
Sbjct: 44 GDGKRG--RQRSPGDEARPKRQRKTKKKNKKQLDLLEREDDPLIQLRSLK 91
>01_06_0765 -
31808775-31809443,31809547-31809703,31809777-31809894,
31810170-31810308
Length = 360
Score = 28.3 bits (60), Expect = 1.7
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 27 SRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKK-SEGLLTGKSLRLSSGGRFP 85
S + D++ PR+ LH KK A LE V+ KK E L T ++ + +
Sbjct: 123 SPKLADRHSPRSPLHEKKRAGTRVAELETKLGKVQDELKKLREQLATAEAAKKDAQVALE 182
Query: 86 EVKRSLSDRFSVISDASS 103
E K+ + + S S A++
Sbjct: 183 EAKKRVGTKGSPASAAAA 200
>04_04_0528 + 25986862-25987938,25988025-25988965,25989071-25989140
Length = 695
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 68 EGLLTGKSLRLSSGGRFPEVKRSLSDRFSVISD 100
E G+SL LS+ F E+ LSD FS+ SD
Sbjct: 617 ESETVGRSLDLSALSSFEELYACLSDMFSIGSD 649
>12_02_1271 +
27472457-27473030,27473122-27473197,27473277-27473392,
27473840-27474354
Length = 426
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 56 ADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVKRSLSDRFSVISDASSKKPAKGLLTIRK 115
AD PV L +E LL G + L+ GG + + SD SVI + + +P +G + +++
Sbjct: 352 ADDPV-LDKIDAEILLRGPDM-LTPGGWCGGTRENGSDPCSVIGNTTHLQPGRGAVRLQR 409
>04_04_1178 + 31508349-31508461,31510074-31510932
Length = 323
Score = 26.6 bits (56), Expect = 5.0
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 42 SKKSAKRVSLHLEEADQPVELRSKKSEGLLTG--KSLRLSSGGRFPEVKRSLSDRFSVIS 99
+++ AK+ + E + EL +K + L T KS S G + ++++ SV S
Sbjct: 61 AEQKAKKKQVEEEISRLSAELEAKHAAELATFGYKSSGSSEKGNMDTLVKAIAG-VSVTS 119
Query: 100 DASSKKPAKG 109
+A S KP+KG
Sbjct: 120 NADSAKPSKG 129
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/52 (30%), Positives = 23/52 (44%)
Query: 10 MLCFVQGFGDSERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVE 61
M CF+ FGD R R+ P ++ P H K ++ EA + VE
Sbjct: 1 MGCFLACFGDRRRRRQPRRQSPARSPPPRPDHVALLGKALTAVDVEAKEEVE 52
>10_08_0393 +
17517511-17517777,17518913-17518987,17519080-17519133,
17519235-17519300,17519383-17519441,17520143-17520177,
17520527-17520616,17520684-17520730,17520817-17520917,
17521259-17521323,17521819-17522135,17522418-17522481,
17522565-17522740,17523386-17523487,17523704-17523847,
17523937-17524032,17524357-17524458,17524740-17524835
Length = 651
Score = 25.8 bits (54), Expect = 8.8
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 47 KRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVKRSLSDRFSVISDA 101
+R+ + + A + L +EG L G + LSS G F ++ + + F V D+
Sbjct: 321 ERIKIEMLSASENNRLEDP-TEGSLGGSNRHLSSAGSFIQLNDAADEFFDVPDDS 374
>02_03_0329 + 17806787-17807294,17819559-17819710
Length = 219
Score = 25.8 bits (54), Expect = 8.8
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 39 DLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVK 88
+ HS ++ L + AD+P SK SE T K+ SSGG+ E K
Sbjct: 64 ETHSGTIVQKYKLKVVAADEPETTSSKGSEARGT-KAAADSSGGKGGEPK 112
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.129 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,405,927
Number of Sequences: 37544
Number of extensions: 125429
Number of successful extensions: 242
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 237
Number of HSP's gapped (non-prelim): 12
length of query: 117
length of database: 14,793,348
effective HSP length: 73
effective length of query: 44
effective length of database: 12,052,636
effective search space: 530315984
effective search space used: 530315984
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 54 (25.8 bits)
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