GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001449-TA|BGIBMGA001449-PA|undefined
         (117 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   3.7  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   3.7  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   3.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   4.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   6.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   8.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   8.5  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 78  LSSGGRFPEVKRSLSDRFSVISDASSKKPAKGLLTIRKTW 117
           LSSG + P V   L+      S   SK+P   LL +  +W
Sbjct: 637 LSSGAKSPTVLEELTHGTLAASTLYSKRP--DLLHLFGSW 674


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 78  LSSGGRFPEVKRSLSDRFSVISDASSKKPAKGLLTIRKTW 117
           LSSG + P V   L+      S   SK+P   LL +  +W
Sbjct: 637 LSSGAKSPTVLEELTHGTLAASTLYSKRP--DLLHLFGSW 674


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 78  LSSGGRFPEVKRSLSDRFSVISDASSKKPAKGLLTIRKTW 117
           LSSG + P V   L+      S   SK+P   LL +  +W
Sbjct: 637 LSSGAKSPTVLEELTHGTLAASTLYSKRP--DLLHLFGSW 674


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 49  VSLHLEEADQPVELRSKKSE 68
           +SL L  A++PV L   K E
Sbjct: 161 ISLGLHRANEPVVLDDSKEE 180


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 13/48 (27%), Positives = 21/48 (43%)

Query: 70  LLTGKSLRLSSGGRFPEVKRSLSDRFSVISDASSKKPAKGLLTIRKTW 117
           LLT     L +  ++ EV  ++   F  I+DA+S    +    I   W
Sbjct: 296 LLTEAYSSLENTLKYYEVGSNVPFNFKFITDANSSSTPEQFKVIIDNW 343


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 7/13 (53%), Positives = 12/13 (92%)

Query: 100 DASSKKPAKGLLT 112
           +A++ KPA+G+LT
Sbjct: 406 EAANGKPAEGMLT 418


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 19 DSERGYSKSRECPDQNKPRTDLHSKK 44
          D+E G+S    C + + P T L  K+
Sbjct: 24 DNEFGFSYLLNCKNYDHPTTLLKLKR 49


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 28  RECPDQNKPRTDLHSKKSAKRVSLH 52
           R+CP +++P    + K  A    LH
Sbjct: 108 RKCPRRHRPVCASNGKIYANHCELH 132


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.366 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,972
Number of Sequences: 429
Number of extensions: 1608
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 117
length of database: 140,377
effective HSP length: 51
effective length of query: 66
effective length of database: 118,498
effective search space:  7820868
effective search space used:  7820868
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)
S2: 39 (19.8 bits)