Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001449-TA|BGIBMGA001449-PA|undefined
(117 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g07760.1 68418.m00888 formin homology 2 domain-containing pro... 30 0.35
At2g30400.1 68415.m03702 ovate family protein 57% similar to ova... 29 0.80
At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 29 1.1
At2g34357.1 68415.m04206 expressed protein 28 1.4
At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha catal... 28 1.8
At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing ... 28 1.8
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 27 4.3
At2g41160.1 68415.m05084 ubiquitin-associated (UBA)/TS-N domain-... 27 4.3
At5g12840.4 68418.m01470 CCAAT-binding transcription factor (CBF... 26 7.5
At5g12840.3 68418.m01469 CCAAT-binding transcription factor (CBF... 26 7.5
At5g12840.2 68418.m01468 CCAAT-binding transcription factor (CBF... 26 7.5
At5g12840.1 68418.m01467 CCAAT-binding transcription factor (CBF... 26 7.5
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein... 26 7.5
At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative simi... 26 7.5
At2g26460.1 68415.m03175 RED family protein similar to Red prote... 26 7.5
At5g49330.1 68418.m06104 myb family transcription factor contain... 25 9.9
At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 25 9.9
At1g27390.1 68414.m03339 mitochondrial import receptor subunit T... 25 9.9
>At5g07760.1 68418.m00888 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 853
Score = 30.3 bits (65), Expect = 0.35
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 14 VQGFGDSERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGL 70
V FG+ Y + +N + +L KK+AK +E+ + V L +KK+ G+
Sbjct: 791 VHYFGEDPNDYPFEQAAHQENVKQAELEKKKAAKEA--EMEKTKKRVSLTNKKASGV 845
>At2g30400.1 68415.m03702 ovate family protein 57% similar to
ovate protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 320
Score = 29.1 bits (62), Expect = 0.80
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 31 PDQNKPRTDLHSKKSAKRVSLH 52
P N PR LH+KK +KR +L+
Sbjct: 67 PHHNSPRNSLHTKKMSKRKTLY 88
>At2g18330.1 68415.m02136 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family associated with
various cellular activities (AAA)
Length = 636
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 32 DQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSG 81
D N ++L KK ++++++ + DQ ++ +KK+EG + +L +G
Sbjct: 543 DSNLKWSNLFKKKKSQKITIEGDLTDQVIKEAAKKTEGFSGREIAKLVAG 592
>At2g34357.1 68415.m04206 expressed protein
Length = 1280
Score = 28.3 bits (60), Expect = 1.4
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 32 DQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVKRSL 91
DQ+K R L S + KR + EEA+ VE R EG +S R + K S
Sbjct: 1110 DQHKTRLALRSSELRKRKADSDEEAEFDVEGRLVIREG---ERSKRKELSDADSDAKSSK 1166
Query: 92 SDRFSVISDASSKKPAK 108
RFS S ++K K
Sbjct: 1167 GSRFSGNSSKKNQKRMK 1183
>At5g67100.1 68418.m08460 DNA-directed DNA polymerase alpha
catalytic subunit, putative similar to SP|O48653 DNA
polymerase alpha catalytic subunit (EC 2.7.7.7) {Oryza
sativa}; contains Pfam profiles: PF03175 DNA polymerase
type B, organellar and viral, PF00136 DNA polymerase
family B, PF03104 DNA polymerase family B, exonuclease
domain
Length = 1492
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 52 HLEEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEVKRSLSDRFSVISDASSKKPA 107
+++E D + L + S+G T K + GG E KR L D++ ++ D +S P+
Sbjct: 871 NVDELDADLTLENDPSKGSKTKKGPAYA-GGLVLEPKRGLYDKYVLLLDFNSLYPS 925
>At2g33435.1 68415.m04098 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 979
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/60 (21%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 14 VQGFGDSERGYSKSRECPDQNKPRTDLHSKK----SAKRVSLHLEEADQPVELRSKKSEG 69
V + ++E+GY +S++ + + + K+ S++ +L ++ D+ R +K+EG
Sbjct: 496 VSDYHETEKGYDRSKKLSREERVKDSSRKKEEAISSSREENLDKQKKDESTSNRKRKAEG 555
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 20 SERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLS 79
+ + Y + + P Q + + K+ V L+ + + L+S + G G+ L +
Sbjct: 219 ASKAYEERVKMPTQRESLDEAAMKRFGDNVGQLLDPSHASI-LKSAAASGQPAGQVLHST 277
Query: 80 SGGRFPEVK 88
SGG P+V+
Sbjct: 278 SGGMSPQVQ 286
>At2g41160.1 68415.m05084 ubiquitin-associated (UBA)/TS-N
domain-containing protein contains Pfam profile PF00627:
UBA/TS-N domain
Length = 287
Score = 26.6 bits (56), Expect = 4.3
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 69 GLLTGKSLRLSSGG----RFPEVKRSLSDRFSVISDASSKKPAK 108
G++ G RL+ G +FPE SL RFS+ S +S +P +
Sbjct: 178 GIIAGSLYRLNIFGIRKAKFPEFMASLFSRFSLPSLSSHSQPPR 221
>At5g12840.4 68418.m01470 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 271
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 47 KRVSLHLEEADQPVELRSKKSEGLLTGKSLR 77
+R +L L+ A +PV + +K+ EG+L + R
Sbjct: 160 ERTALPLDMAQEPVYVNAKQYEGILRRRKAR 190
>At5g12840.3 68418.m01469 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 272
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 47 KRVSLHLEEADQPVELRSKKSEGLLTGKSLR 77
+R +L L+ A +PV + +K+ EG+L + R
Sbjct: 161 ERTALPLDMAQEPVYVNAKQYEGILRRRKAR 191
>At5g12840.2 68418.m01468 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 271
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 47 KRVSLHLEEADQPVELRSKKSEGLLTGKSLR 77
+R +L L+ A +PV + +K+ EG+L + R
Sbjct: 160 ERTALPLDMAQEPVYVNAKQYEGILRRRKAR 190
>At5g12840.1 68418.m01467 CCAAT-binding transcription factor
(CBF-B/NF-YA) family protein contains Pfam profile:
PF02045 CCAAT-binding transcription factor (CBF-B/NF-YA)
subunit B
Length = 272
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 47 KRVSLHLEEADQPVELRSKKSEGLLTGKSLR 77
+R +L L+ A +PV + +K+ EG+L + R
Sbjct: 161 ERTALPLDMAQEPVYVNAKQYEGILRRRKAR 191
>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 595
Score = 25.8 bits (54), Expect = 7.5
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 28 RECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSGGRFPEV 87
R + K D + +R +H ++ PV +S+K +GK R+ R+ E
Sbjct: 441 RSNSSRKKRSEDDYKSHHRERKQVH---SNDPVSEKSQKQHYSESGKIQRVEKEHRYDER 497
Query: 88 KRSLSDRFSVISDASSKKP 106
+ D S + S KKP
Sbjct: 498 RHRYVDMESENRNRSEKKP 516
>At4g12570.1 68417.m01983 ubiquitin-protein ligase, putative similar
to SP|P39940 Ubiquitin--protein ligase RSP5 (EC 6.3.2.-)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00240: Ubiquitin family, PF00632: HECT-domain
(ubiquitin-transferase)
Length = 873
Score = 25.8 bits (54), Expect = 7.5
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 7/97 (7%)
Query: 18 GDSERGYSKSRECPDQNKPRTD-----LHSKKSAKRVSLHLEEADQPVELRSK-KSEGLL 71
G++ R S S EC N+P + + K + +H E+ D +L + + + +
Sbjct: 72 GENSRSLSSSGECSSSNRPESTRLQIFVRMMSGGKTIVIHAEKYDTVEKLHQRIEWKTKI 131
Query: 72 TGKSLRLSSGGRFPEVKRSLSDRFSVISDASSKKPAK 108
R+ G+ + + SL+ +S+ DAS + A+
Sbjct: 132 PALEQRVIYKGKQLQRENSLT-YYSIEQDASLQLVAR 167
>At2g26460.1 68415.m03175 RED family protein similar to Red
protein (RER protein) (Swiss-Prot:Q9Z1M8) [Mus
musculus]
Length = 585
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 35 KPRTDLHSKKSAKRVSLHLEEADQP 59
KP H +K+A+R LEE+D P
Sbjct: 2 KPSKSHHKEKTARRREEKLEESDNP 26
>At5g49330.1 68418.m06104 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA binding domain;
identical to cDNA putative transcription factor
(At5g49330) GI:15420625
Length = 342
Score = 25.4 bits (53), Expect = 9.9
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 20 SERGYSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEG 69
S G + + + K RT S K K++ + QP EL S SEG
Sbjct: 142 SSSGAKNNNKTKKKKKGRTSRSSMKKHKQMVTASQCFSQPKELESDFSEG 191
>At4g36580.1 68417.m05193 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family ('A'TPases
'A'ssociated with diverse cellular 'A'ctivities)
Length = 620
Score = 25.4 bits (53), Expect = 9.9
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 24 YSKSRECPDQNKPRTDLHSKKSAKRVSLHLEEADQPVELRSKKSEGLLTGKSLRLSSG 81
Y K + + KP+ KK ++++++ + D+ + +KK+EG + +L +G
Sbjct: 517 YLKMGDNNEDTKPKWSHLFKKLSQKITVEEDLTDKVISEAAKKTEGFSGREIAKLVAG 574
>At1g27390.1 68414.m03339 mitochondrial import receptor subunit
TOM20-2 (TOM20-2) identical to mitochondrial import
receptor subunit TOM20-2 SP:P82873 from [Arabidopsis
thaliana]
Length = 210
Score = 25.4 bits (53), Expect = 9.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 67 SEGLLT--GKSLRLSSGGRFPEVKRSLSDRFSVISDASSKKPAK 108
SE LL G L LS PE K L+D S + +A + P K
Sbjct: 32 SENLLKWGGALLELSQFQPIPEAKLMLNDAISKLEEALTINPGK 75
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.129 0.366
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,319
Number of Sequences: 28952
Number of extensions: 106074
Number of successful extensions: 235
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 18
length of query: 117
length of database: 12,070,560
effective HSP length: 72
effective length of query: 45
effective length of database: 9,986,016
effective search space: 449370720
effective search space used: 449370720
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)
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