GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001448-TA|BGIBMGA001448-PA|IPR000467|D111/G-patch,
IPR008162|Inorganic pyrophosphatase
         (945 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          29   0.20 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   7.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    23   9.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 28.7 bits (61), Expect = 0.20
 Identities = 11/28 (39%), Positives = 19/28 (67%)

Query: 865 VGFKMLQKLGWNEGQGLGVEGSGIVEPI 892
           +G K+L ++G+  G+GLG +  GI  P+
Sbjct: 162 IGAKLLLQMGFQPGKGLGKDLQGISAPV 189


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 7.4
 Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 1/25 (4%)

Query: 685  DEPPPADI-KPPGVIAPMPPNILPG 708
            D P   D  KPP  + P PP +  G
Sbjct: 996  DNPSREDCTKPPEPVTPAPPQVTTG 1020


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 10/23 (43%), Positives = 10/23 (43%)

Query: 687 PPPADIKPPGVIAPMPPNILPGP 709
           PPP    PP  I    P   PGP
Sbjct: 280 PPPHVYNPPDHIQQATPYSAPGP 302


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.309    0.129    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,973
Number of Sequences: 317
Number of extensions: 6651
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 945
length of database: 114,650
effective HSP length: 63
effective length of query: 882
effective length of database: 94,679
effective search space: 83506878
effective search space used: 83506878
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 47 (23.0 bits)