Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001448-TA|BGIBMGA001448-PA|IPR000467|D111/G-patch,
IPR008162|Inorganic pyrophosphatase
(945 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 52 5e-07
SPAC2G11.04 |||RNA-binding protein, G-patch type |Schizosaccharo... 48 8e-06
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 41 7e-04
SPCC1442.13c |||RNA-binding protein, G-pathc type|Schizosaccharo... 38 0.009
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 37 0.011
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 33 0.14
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 33 0.25
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 33 0.25
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 32 0.43
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 30 1.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 5.3
SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|c... 28 7.0
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 28 7.0
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 28 7.0
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar... 27 9.3
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 9.3
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 27 9.3
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 51.6 bits (118), Expect = 5e-07
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 844 LKNGKEPDLSDYKEF-KLKEDNVGF--KMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQ 900
LKN K ++S K K+K + GF KML+K+G+ +GQGLG GI EP+ +P +
Sbjct: 95 LKN-KNDEVSQAKNIPKMKFNTTGFGAKMLEKMGYKQGQGLGANAEGIAEPVQSKLRP-E 152
Query: 901 NLGLGA 906
+GLGA
Sbjct: 153 RVGLGA 158
>SPAC2G11.04 |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 301
Score = 47.6 bits (108), Expect = 8e-06
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 861 KEDNVGFKMLQKLGWNEGQGLGVEGSGIVEPIN 893
K++NV KMLQ+ GW EGQGLG GI+ P++
Sbjct: 251 KKENVALKMLQRCGWKEGQGLGQHNQGIINPLH 283
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 864 NVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGASTSDV 911
NV KML +GWN+G GLG +GI E I + +GLG S +
Sbjct: 492 NVSMKMLNSMGWNKGSGLGTNENGIKEAIQPTMY-LPGVGLGNKGSKI 538
>SPCC1442.13c |||RNA-binding protein, G-pathc
type|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 37.5 bits (83), Expect = 0.009
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 866 GFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQ 897
G ++L+ +GW+ G+GLG E G+V+P+ K+
Sbjct: 149 GKQLLEMMGWSRGKGLGSENQGMVDPVVAVKE 180
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 863 DNVGFKMLQKLGWNEGQGLGVEGSGIVEPINKAKQPVQNLGLGA-STSDVVSPDDDEFDA 921
+ +GFK+L GW G GLG + G + I K LG+GA +T+D+ EF+A
Sbjct: 26 NRLGFKLLSSYGWVNGNGLGEKQHGRIHNI-KVSLKDDTLGIGAKATNDLEWSGLGEFNA 84
Query: 922 YRKRM 926
R+
Sbjct: 85 IFGRL 89
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 33.5 bits (73), Expect = 0.14
Identities = 18/48 (37%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 859 KLKEDNVGFKMLQKLGWNEGQGLG-VEGSGIVEPINKAKQPVQNLGLG 905
++ ++N G ++L+KLGW G+GLG E G + + +A V GLG
Sbjct: 649 EISKENPGRRLLEKLGWYAGKGLGHPENEGSKDSL-RAIVKVSRSGLG 695
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 832 EELKK-FMEKYSALKNGKEPDLSDYKEFKLKEDNVGFKMLQKLGWN 876
+EL K + K + + D +EF ++D++G KML+ LGWN
Sbjct: 106 QELSKVYTSKINTIDTSIPIDDPLLREFSNRDDSIGEKMLKNLGWN 151
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 32.7 bits (71), Expect = 0.25
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 1/96 (1%)
Query: 124 QDEDNSDSNTQRRHSGDRGREKYRRWTDRGRNRAQSPITPVVVRRESVDNINTNSIPSLM 183
+ E +S+ N S D E +D + + S +S N + + S
Sbjct: 226 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSS 285
Query: 184 QFPVRQPKDS-EEQDNWKSKTDGDSDSNSEQGNMYT 218
+ + S E+ D+ S +D DS S+SE GN T
Sbjct: 286 DSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNT 321
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 31.9 bits (69), Expect = 0.43
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 860 LKEDNVGFKMLQKLGWN---EGQGLGVEGSGIVEPINKAKQPVQNLGLG 905
LK ++G+++L + GW+ + GLG+E G P+ + +GLG
Sbjct: 110 LKPKSLGYRVLSQYGWSPQGDTAGLGLENQGRRAPVRAFRVKNDTIGLG 158
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 136 RHSGDRGREKYRRWTDRG--RNRAQSPITPVVVRRESVDNINTNSIPSLMQFPVRQPK 191
R DR RE+ R W RG R S + ++ S N+NT + PS +PK
Sbjct: 214 RDPSDRVREEPREWVRRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTTSSKPK 271
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 600 FRELVDNIRKGFDKKPVVKPEDKYEPEFSLEDDDSGDNRRIKEESQDSSLVD 651
+ +L + + + K+ +V+ D ++ +F E++D N + + QD+ L+D
Sbjct: 781 YEKLCEVVMEVLQKQHIVQAGDVFDDDF--EEEDIVSNEEVDDTEQDALLID 830
>SPCC1620.03 |mug163||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 186
Score = 27.9 bits (59), Expect = 7.0
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 583 DQYLWILHNTDSKEYKMFRELVDNIRK 609
D+Y W+ H K+ ++R ++DN+ +
Sbjct: 142 DEYTWVFHFDIDKKGIIYRHIIDNLER 168
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 533 KPKETNPGDVPPPPSNATQDAF 554
+P E P +PPPP NA Q A+
Sbjct: 769 QPFEMRPTAIPPPPKNAFQRAW 790
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 27.9 bits (59), Expect = 7.0
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 547 SNATQDAFPPSVYRAANEVASNGDHWENVLKAIHSQDQYLWILHNTDSKEYKMFRELVDN 606
+N T+ S ANE+ G+ + NV K S D Y + + D+K + +L D
Sbjct: 797 NNQTRKVKVESPLSNANEL---GELFSNVYKISFSGDSYELNIEDPDTKISYLLEDLSDL 853
Query: 607 IRKGFDKKPVVKPEDKYEPEFSLEDDDSGDNRRIKEESQDSSLVDYKNREYKREASS 663
K + K +D + ED SG+ I+ S ++L D+ N SS
Sbjct: 854 KYKSL-VSFMFKEQDANKKR---EDFHSGEVSAIQHSSAQNTLDDHVNTTTHESPSS 906
>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 327
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/45 (31%), Positives = 22/45 (48%)
Query: 813 DELTRQAAGKHHIGDFLPPEELKKFMEKYSALKNGKEPDLSDYKE 857
D+L R A K IG PE + +LK +P+LS++ +
Sbjct: 88 DKLLRAAGRKEEIGSIKEPENNGNDKDSQDSLKLHYKPNLSEFAD 132
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.5 bits (58), Expect = 9.3
Identities = 20/89 (22%), Positives = 40/89 (44%), Gaps = 10/89 (11%)
Query: 562 ANEVASNGDHWENVLKAIHSQDQYLWILHNTDSKEYKM--------FRELVDNIRKGFDK 613
+N AS +EN + + S W ++ TDS+ ++ F EL +N+ D+
Sbjct: 1160 SNFPASTTPSYENSNRRLQSVSDLSWYVNKTDSEPFRFGTMIAAETFDELENNLALAIDR 1219
Query: 614 KPVVKPEDKYEPEFSLEDDDSGDNRRIKE 642
P+ + + + +L+ + S N +E
Sbjct: 1220 LPLSR--NYFNAGLTLDGNSSSANDNTQE 1246
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 594 SKEYKMFRELVDNIRKGFDKKPVVKPEDKYEP 625
+K +K RE ++N++ K+P + PE EP
Sbjct: 148 TKRHKKLREAINNVQIELQKQPFLLPEVILEP 179
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.129 0.380
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,187,239
Number of Sequences: 5004
Number of extensions: 131789
Number of successful extensions: 386
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 373
Number of HSP's gapped (non-prelim): 19
length of query: 945
length of database: 2,362,478
effective HSP length: 79
effective length of query: 866
effective length of database: 1,967,162
effective search space: 1703562292
effective search space used: 1703562292
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 58 (27.5 bits)
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