GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
         (472 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan oxyge...    24   2.7  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    24   2.7  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    24   2.7  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   3.5  
U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.           23   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   4.6  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    22   8.1  

>AY052625-1|AAL15473.1|  135|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 135

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 196 LCIRLIDLKLGIHVENTFKKDNGYTLNF 223
           L  RL++ KLG+  EN  K +  Y+  F
Sbjct: 76  LQFRLLENKLGVRQENRVKYNQNYSKVF 103


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 196 LCIRLIDLKLGIHVENTFKKDNGYTLNF 223
           L  RL++ KLG+  EN  K +  Y+  F
Sbjct: 136 LQFRLLENKLGVRQENRVKYNQNYSKVF 163


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 23.8 bits (49), Expect = 2.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 196 LCIRLIDLKLGIHVENTFKKDNGYTLNF 223
           L  RL++ KLG+  EN  K +  Y+  F
Sbjct: 136 LQFRLLENKLGVRQENRVKYNQNYSKVF 163


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 3.5
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 11/94 (11%)

Query: 298 KNEFAEL-YTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSND 356
           KN   EL Y  ++++ AR       F RL N+LKRA   +  +++I++    +   + + 
Sbjct: 225 KNRRGELFYYMHQQIIARYN-----FERLCNKLKRATRFNDFNEAIKEAYFPKLDSLVSS 279

Query: 357 AAYQHERRRVNYLDKKLTHLKRMVHQYDQLIYEI 390
            A+     RV   ++KL  L R V Q  Q + ++
Sbjct: 280 RAWP---SRV--ANQKLRDLNREVDQIKQDVEDL 308


>U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.
          Length = 45

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 357 AAYQHERRRVNYLDKKLTHLKRMVHQYD 384
           AA   ERRR+N L++    L++++   D
Sbjct: 1   AANARERRRMNGLNEAFDRLRQVIPSLD 28


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 4.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)

Query: 418 PEAGSRIDGEYDSGVLT 434
           PE G +++G+ D+G +T
Sbjct: 22  PEEGDKLEGDEDTGSMT 38


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 12/31 (38%), Positives = 15/31 (48%)

Query: 196 LCIRLIDLKLGIHVENTFKKDNGYTLNFTTV 226
           LC R ID K+     ++F K   YT N   V
Sbjct: 22  LCPRSIDEKIKRQERHSFYKIYKYTYNIVAV 52


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,400
Number of Sequences: 317
Number of extensions: 3486
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 7
length of query: 472
length of database: 114,650
effective HSP length: 59
effective length of query: 413
effective length of database: 95,947
effective search space: 39626111
effective search space used: 39626111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)