GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    29   1.4  
SPCC1442.17c ||SPCC285.02c|DUF292 family protein|Schizosaccharom...    29   1.9  
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    29   1.9  
SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    29   1.9  
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    27   4.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   5.7  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    27   5.7  
SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces pomb...    27   5.7  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    27   7.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   9.9  
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc...    26   9.9  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/50 (30%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 356 DAAYQHERRRVNYLDKKLTH--LKRMVHQYDQLIYEIGIKLYMYVLYFKS 403
           D++ +++ R+ N + +K+T     + V Q D+L+    +K ++Y +YFKS
Sbjct: 848 DSSNKYKSRKRNPIRQKVTEDDKGKCVAQTDELVQRGKVKWHVYWMYFKS 897


>SPCC1442.17c ||SPCC285.02c|DUF292 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 271

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 269 SVPDEITTDLDEIERRYPPITSSGMRRAYKNEFAELY--TEY-RELYARVAQVAALFT-- 323
           S PD  T D    +  YPPI    +  AY+ E    Y   +Y +E    +   A   T  
Sbjct: 128 SDPDLATNDTAFYQLLYPPIPKDELVEAYRKELIRTYFPNDYPKEANKDIPSSAEADTML 187

Query: 324 RLENELKRAQPMSPHHQSIEQ 344
            LE+   R QP S   ++ ++
Sbjct: 188 NLESSENREQPTSLKEENTQE 208


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/72 (22%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 344 QRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLIYEIGIKLYMYVLYFKS 403
           ++ +E Y +V+ D A +  +RR+N L+++L   +    + ++ +   G K   ++ + ++
Sbjct: 28  KKYIEHYYKVAVDHAVERNQRRIN-LEQRLATERGSEERKNRQLRASGEKESQFLRFRRT 86

Query: 404 VTHLKDYGDIPV 415
              L+D+  I V
Sbjct: 87  RLSLEDFSTIKV 98


>SPAC664.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 117

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 278 LDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENEL-KRAQPMS 336
           +DE  +    +  +G+     NEF E   +Y+ +   +A   A+  R E E+      M+
Sbjct: 37  VDEYSKESEDVLENGLEHVQSNEFTE-SEDYKSIERSLAVTEAVMARFEKEMGSLRDQMN 95

Query: 337 PHHQSIE 343
             HQ ++
Sbjct: 96  FFHQILD 102


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 274 ITTDLDEIERRYPPITSSGMRRAYKNEFA-ELYTEYRELYARVAQVAALFTRLENELKRA 332
           I T L+ + +R   + +   R  YK   A +   E +E    +AQ    FT  E E++ A
Sbjct: 87  IATTLNAM-KRVSQVHAKRERLFYKKRLAGKRAQELQEAQKLIAQNVPQFTEPEGEVETA 145

Query: 333 QPMSPHHQSIEQRIVEE 349
           +   P   S E+  +EE
Sbjct: 146 EVQEPQIVSDEEYTMEE 162


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 122 KPELYTRLSSEGIKDKERSAVNKILPQ-ISLMKDNCYHLRRHIWNDVNEDWPFY 174
           +PE+Y R+    +K  ++S+   I+ + ISL+ D  +    +++++V +   FY
Sbjct: 486 RPEVYARMLCPLVKSLDKSSSEVIIDEVISLVCDLSWIYPSNVFHEVKDSLCFY 539


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 270 VPDEITTDLDEIERRYPPITSSGMRRA 296
           V   I+T LD ++ RY   TSS MR+A
Sbjct: 186 VATTISTPLDIVKTRYQVATSSAMRKA 212


>SPCC736.15 |||protein kinase inhibitor |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 30/98 (30%), Positives = 41/98 (41%), Gaps = 10/98 (10%)

Query: 329 LKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLIY 388
           LK   P SP   ++EQ +V E       A    E +  N   +K    + M    D L +
Sbjct: 156 LKHKDPESPRLVTMEQELVRE-----EAACLVAEAQLSNTTREKFK--QAMTFNLDAL-H 207

Query: 389 EIGIKLYMYVLYFKSVTHLKDYGDIPVTQPEAGSRIDG 426
           E   KL +   Y + + +L D  D PVT  EA    DG
Sbjct: 208 EHAEKLNLIATYGRHLLNLID--DTPVTPGEARPAYDG 243


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 277 DLDEIER-RYPPITSSGMRRAYKNE--FAELYTEYRELYAR 314
           D D+I+  +  P T    + ++  E  FA L+ +YRE Y R
Sbjct: 27  DTDDIDHWKIEPFTKDDSKESFLEESSFATLFPKYREKYLR 67


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 3/73 (4%)

Query: 320 ALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHE--RRRVNYLDKKLTHLK 377
           +L T LEN+ KR   ++  +QS+ +R   E +  S  A+ Q    + ++  L  + +HL 
Sbjct: 102 SLKTNLENQNKRFDALTTENQSL-RRANSELQEQSKIASEQLSIAKDQIEALQNENSHLG 160

Query: 378 RMVHQYDQLIYEI 390
             V    Q + +I
Sbjct: 161 EQVQSAHQALSDI 173


>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 765

 Score = 26.2 bits (55), Expect = 9.9
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 137 KERSAVNKILPQISLMKDNCYHLRR----HIWNDVNEDWPFY 174
           KE  +  ++LP  +L     +HLRR    HI+N+  ++  FY
Sbjct: 561 KEDPSSFRLLPNFTLYPQFIFHLRRSPFLHIFNNSPDETSFY 602


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,808,049
Number of Sequences: 5004
Number of extensions: 71878
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 11
length of query: 472
length of database: 2,362,478
effective HSP length: 75
effective length of query: 397
effective length of database: 1,987,178
effective search space: 788909666
effective search space used: 788909666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)