GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0212 + 26410330-26410419,26410562-26410846,26411005-264112...    31   2.6  
05_06_0204 + 26354319-26356967                                         30   4.6  
05_06_0215 + 26444752-26444803,26444899-26445044,26445368-264455...    29   8.0  
03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574           29   8.0  

>05_06_0212 +
           26410330-26410419,26410562-26410846,26411005-26411208,
           26411636-26411692,26411859-26412926
          Length = 567

 Score = 30.7 bits (66), Expect = 2.6
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 232 SPPVKPNGFRSSP-PVE--QTNI---TEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRY 285
           S  +K N  RSS  PVE  QTNI   TEK              SVP+   T+L++++R  
Sbjct: 277 SGKLKRNSRRSSAAPVESSQTNIAMETEKSRRNPRKFTSSTADSVPESQLTELEKVKRNL 336

Query: 286 PPITSS 291
             +T+S
Sbjct: 337 RKVTNS 342


>05_06_0204 + 26354319-26356967
          Length = 882

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 131 SEGIKDKERSAVNKILPQISLMKDNCYHLRRHIWNDVNEDWPFYTEEEK 179
           SEG  + +R++   + P+    +DNCY  +R I + + E   F  EEEK
Sbjct: 723 SEGWVESKRNSKETLAPEQDA-EDNCYSEQRDIRSTLEEIGLFTLEEEK 770


>05_06_0215 +
           26444752-26444803,26444899-26445044,26445368-26445517,
           26445595-26445739,26446550-26446735,26446813-26446886,
           26446966-26447047,26447470-26447858
          Length = 407

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 146 LPQISLMKDNCYHLRRHIWNDVNE-DWPFYTEEEKRMLKSGFYGCSIITTELCIRLIDLK 204
           + ++ +M++ C  L    W  + E D     EE      + F GC ++  EL +RLI+L+
Sbjct: 19  MERLKVMRNLCEVLGIDFWEKMEELDIDPKVEELDNDCAAWFTGCHVMIKELGLRLIELR 78


>03_02_0424 + 8338117-8339649,8341274-8341378,8341404-8341574
          Length = 602

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)

Query: 321 LFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKL-THLKRM 379
           L  +++ E++        H+   Q + +E   V +DA +Q E+ ++   +KKL   ++  
Sbjct: 242 LSDKMDKEIEDVNADIKAHEVCLQHLEQESYNVLSDAGFQEEKLKIEEEEKKLNAAIEEA 301

Query: 380 VHQYDQLIYEI 390
             QY ++  E+
Sbjct: 302 EKQYSEISSEM 312


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,985,670
Number of Sequences: 37544
Number of extensions: 405783
Number of successful extensions: 960
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 5
length of query: 472
length of database: 14,793,348
effective HSP length: 85
effective length of query: 387
effective length of database: 11,602,108
effective search space: 4490015796
effective search space used: 4490015796
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)