GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25051| Best HMM Match : Occludin_ELL (HMM E-Value=4.5)              35   0.12 
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        33   0.66 
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              33   0.66 
SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3)                32   0.87 
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.87 
SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)             32   1.1  
SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)                     32   1.1  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     31   2.0  
SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   2.7  
SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)        30   4.6  
SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)                     30   4.6  
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   4.6  
SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)                 29   6.1  
SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.1  
SB_49007| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=4.9)            29   8.1  
SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   8.1  
SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)              29   8.1  

>SB_25051| Best HMM Match : Occludin_ELL (HMM E-Value=4.5)
          Length = 53

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 13/44 (29%), Positives = 29/44 (65%)

Query: 341 SIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYD 384
           +IE++IV  Y++ + D +++  ++R   L  KLT++K ++  +D
Sbjct: 1   NIEKQIVRLYKKHTQDPSWERCKKRCQALHTKLTYIKELIRDFD 44


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 20/88 (22%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 288 ITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIV 347
           + + G+ R   N+ A L  E +EL  +++++    TRL+  +   +      +++  + V
Sbjct: 859 VDTGGVSRKENNDVASLRRERKELELQISELKVQLTRLQENVMEMEHKKVVMETVTHKAV 918

Query: 348 EEYRRVSND---AAYQHERRRVNYLDKK 372
           E     S+D     ++ E  +VN  DK+
Sbjct: 919 EGGLTSSDDRFREEFRSEVAQVNLADKR 946


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 32.7 bits (71), Expect = 0.66
 Identities = 16/64 (25%), Positives = 31/64 (48%)

Query: 295  RAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVS 354
            ++YKN + +L ++YR+L      + A    L   ++  +      +  +Q I EE  + +
Sbjct: 1222 QSYKNRYEKLESDYRKLQQENVDLRAKVNALNKRIRDLEAAKDRAEKEKQAIKEELVQAN 1281

Query: 355  NDAA 358
            ND A
Sbjct: 1282 NDLA 1285


>SB_15164| Best HMM Match : Sas10_Utp3 (HMM E-Value=5.3)
          Length = 478

 Score = 32.3 bits (70), Expect = 0.87
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 2/83 (2%)

Query: 319 AALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNY--LDKKLTHL 376
           AAL T L+  L +AQPM P   S +    ++ RR            R NY  LDK  T++
Sbjct: 292 AALETVLKAVLGQAQPMVPPPSSYKGNFFQDVRRALFGVGLVTRDDRGNYSMLDKDYTNM 351

Query: 377 KRMVHQYDQLIYEIGIKLYMYVL 399
            R +++   +   +  +L+ Y++
Sbjct: 352 SRFLNRILGMEVVLQNELFSYLM 374


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 32.3 bits (70), Expect = 0.87
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 293  MRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRA---QPMSPHHQSIEQRIVEE 349
            +R A  NE AE      E   +V ++      L++ELKRA   + M+  H +     +++
Sbjct: 2452 VRMAALNEAAEKQGTAEE---QVTKLKTQLEDLQSELKRAREREKMNEDHNTRLSTTIDK 2508

Query: 350  YRRVSNDAAYQHERRRVNYLDKKLT---HLKRMVHQYDQLIYEIGI 392
                SN+    H + R+N L++K      L+ M  Q D L  E G+
Sbjct: 2509 LLTESNERLQAHLKERMNALEEKTAVTQELESMKLQVDDLQKEKGM 2554


>SB_28946| Best HMM Match : Occludin_ELL (HMM E-Value=0.27)
          Length = 396

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 275 TTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENEL 329
           T ++D  +++Y PI +   R  YK +F   Y EY  L  ++  V   F  L+  L
Sbjct: 341 TAEMD-YKKQYRPIETYEQRLLYKQDFQVEYEEYLHLKNKIDNVTKKFMELKGSL 394


>SB_10195| Best HMM Match : CXC (HMM E-Value=0.003)
          Length = 1365

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 9/82 (10%)

Query: 161 RHIWNDV-NEDWPFYTEEEKRMLKSGFYGCSIITTELCIRLIDLKLGIHVENTFKKDNGY 219
           RH++  + N D+   T + KR     F+G +++  +   +  D K+ +HV+ + +  +  
Sbjct: 306 RHVFFAIDNVDFAEDTPDGKRT----FHGTAMVIYQRA-KAQDQKIEVHVDASLQHCSIE 360

Query: 220 TLN--FTTVKEICPSPPVKPNG 239
            L+  FT++ E CP+PP+KP G
Sbjct: 361 DLSESFTSLLE-CPAPPLKPKG 381


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 31.1 bits (67), Expect = 2.0
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 296  AYKN-EFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVS 354
            A++N E A+L T    L  R+ +      RLENEL++A      + +   R+  E  +  
Sbjct: 1723 AHRNDELAQLMTAQENLMMRLEEELGERQRLENELRKANENLEEYAADNDRLERELAKSK 1782

Query: 355  NDAA 358
             D A
Sbjct: 1783 EDGA 1786


>SB_30353| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1553

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 6/101 (5%)

Query: 298  KNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPM---SPHHQ-SIEQRIVEEYRRV 353
            KNE   L T YRE  + +    ++  R+ +E K        S H Q  +E ++    +R+
Sbjct: 1258 KNELGSLDTRYREATSSLTHRNSVIQRMRDESKDISEQAEESKHRQLELESKLNAANKRI 1317

Query: 354  SNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLIYEIGIKL 394
            SN    + E+++++ L+     L +++   D+ I ++  +L
Sbjct: 1318 SN-LEERLEKKQMSSLESS-EQLSQIIEDKDRAIRDLKSEL 1356


>SB_59515| Best HMM Match : Pox_A_type_inc (HMM E-Value=3.2e-31)
          Length = 2122

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 273  EITTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYR-----------ELYARVAQVAAL 321
            EI  +  E+++R   +     R++ +  F EL T+Y+           E+ A  A+V  +
Sbjct: 1661 EIQRENIELQKRIAELEIQ--RKSVEENFGELETKYKKMEKWNVDLREEVIAHNARVQEV 1718

Query: 322  FTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERR--RVNYLDKKLTHLKRM 379
               L+   KR Q +    + +  ++    R   N    Q+     R+N L+K++T L+  
Sbjct: 1719 EHELDRAKKRIQELEEEIRDLMLKLGTS-RESDNQGDKQNSEMSARINSLEKRITTLQGQ 1777

Query: 380  VHQYDQLIYEIGIKLYMY 397
                D+ I ++  KL  Y
Sbjct: 1778 AQDKDEEIAQLKRKLNEY 1795


>SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)
          Length = 273

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 2/79 (2%)

Query: 308 YRELYARVAQVAALFTR-LENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRV 366
           YRE+Y RV+      T+  + + ++ Q      Q  +Q+  ++ ++       Q +++  
Sbjct: 11  YREVYQRVSNCRLRKTKQQQQQQQKQQQQQQQQQQKQQQQKQQQQQQQQQQQQQQQQQHQ 70

Query: 367 NYLDKKLTHL-KRMVHQYD 384
              DKK T + +RM  Q D
Sbjct: 71  QRTDKKQTEIDRRMEGQID 89


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 5/91 (5%)

Query: 301  FAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSND---- 356
            + EL  E R L   V +   L   L NE +  + +    + +     EE + ++ D    
Sbjct: 1074 YEELSEENRSLAEHVQESERLLQDLRNEKENLRALLESKEQLVMSYSEEMKNLTKDNNEL 1133

Query: 357  -AAYQHERRRVNYLDKKLTHLKRMVHQYDQL 386
                +  + +++  DK+LT+L  +  + DQL
Sbjct: 1134 SVLVEEYQVKLHEKDKELTNLSHLEFEVDQL 1164


>SB_54400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 723

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 241 RSSPPVEQTN--ITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPPITS 290
           +S PP++ TN  + E DI            ++ DE T  +  ++RR+P I S
Sbjct: 402 QSMPPLKATNGRLVESDIGKSEMLNQHFRENLSDEDTDSIPLLKRRFPQIPS 453


>SB_13671| Best HMM Match : RVT_1 (HMM E-Value=1.8e-11)
          Length = 1702

 Score = 29.5 bits (63), Expect = 6.1
 Identities = 11/47 (23%), Positives = 28/47 (59%)

Query: 321  LFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVN 367
            +F+++ + L+ A+P   H +++  R++E+ +   ND   +   ++VN
Sbjct: 1076 MFSQVWDVLRGARPTIQHQRNVPLRLIEQLKTTINDLEQREVIKKVN 1122


>SB_45442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1103

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)

Query: 324 RLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVN 367
           R   +LK A+P   H +++  R++E+ +   ND   +   ++VN
Sbjct: 298 RSGEQLKGARPTIQHQRNVPLRLIEQLKTTINDLEQREVIKKVN 341


>SB_49007| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=4.9)
          Length = 312

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 17/56 (30%), Positives = 26/56 (46%)

Query: 304 LYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSNDAAY 359
           L T++  LYAR    A LF   +   +  QP +  ++      VE Y  VS ++ Y
Sbjct: 186 LLTDHGVLYARALSEALLFASSQRLTRECQPAAKVYEWSVFLFVEPYTAVSPESFY 241


>SB_37561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1209

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 324  RLENELKRAQPMSPHH--QSIEQRIVEEYRRVSNDAAYQHER 363
            RLE E K+   +S HH  ++ ++R+ +   R +N   Y H R
Sbjct: 1133 RLEAEFKKLFKLSKHHPSEAAKKRVNKAKNRYANIVTYDHSR 1174


>SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
          Length = 902

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 14/58 (24%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 332 AQPMSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLIYE 389
           AQ     H+  + R++E++  + +    +  +R    + KK  HL+R++H+Y+  +Y+
Sbjct: 52  AQQNEKDHKK-KMRVIEDHM-LQHKQEERELKRAEGDIIKKQHHLRRVMHEYENTVYK 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,387
Number of Sequences: 59808
Number of extensions: 493367
Number of successful extensions: 1303
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1284
Number of HSP's gapped (non-prelim): 29
length of query: 472
length of database: 16,821,457
effective HSP length: 85
effective length of query: 387
effective length of database: 11,737,777
effective search space: 4542519699
effective search space used: 4542519699
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)