GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
         (472 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding pr...    25   5.9  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   7.7  

>AJ618923-1|CAF02002.1|  155|Anopheles gambiae odorant-binding
           protein OBPjj5c protein.
          Length = 155

 Score = 24.6 bits (51), Expect = 5.9
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 148 QISLMKDNCYHLRRHIWN 165
           Q  +  +NC++L RHIW+
Sbjct: 137 QFVVALNNCHYLFRHIWD 154


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 21/97 (21%), Positives = 43/97 (44%), Gaps = 10/97 (10%)

Query: 282 ERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQS 341
           ++R+  + S+G+      E A L  +      + A+      + E ELK +Q +    Q 
Sbjct: 377 QKRFEAV-SAGLSTNEDGEAATLQDQLIAAKQKSAEATTAIKQSEMELKHSQQLLRDKQK 435

Query: 342 IEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKR 378
                       S+DAAY  ++R++  ++ ++  L+R
Sbjct: 436 ---------NMNSSDAAYLEDKRKLTKVEGQIGQLER 463


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.135    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 399,157
Number of Sequences: 2123
Number of extensions: 15842
Number of successful extensions: 22
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 21
Number of HSP's gapped (non-prelim): 2
length of query: 472
length of database: 516,269
effective HSP length: 66
effective length of query: 406
effective length of database: 376,151
effective search space: 152717306
effective search space used: 152717306
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 50 (24.2 bits)