Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001447-TA|BGIBMGA001447-PA|IPR010844|Occludin and RNA
polymerase II elongation factor ELL
(472 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U16282-1|AAA57120.1| 621|Homo sapiens ELL protein. 92 4e-18
S77890-2|AAB34056.1| 576|Homo sapiens MEN protein. 92 4e-18
BC049195-1|AAH49195.1| 621|Homo sapiens elongation factor RNA p... 92 4e-18
AB208794-1|BAD92031.1| 565|Homo sapiens elongation factor RNA p... 92 4e-18
U88629-1|AAC51232.1| 640|Homo sapiens RNA polymerase II elongat... 83 2e-15
BC028412-1|AAH28412.1| 640|Homo sapiens elongation factor, RNA ... 83 2e-15
AB209343-1|BAD92580.1| 519|Homo sapiens elongation factor, RNA ... 83 2e-15
BX538289-1|CAD98084.1| 309|Homo sapiens hypothetical protein pr... 81 8e-15
CR457358-1|CAG33639.1| 397|Homo sapiens ELL3 protein. 77 1e-13
BC019293-1|AAH19293.1| 397|Homo sapiens elongation factor RNA p... 77 1e-13
BC006548-1|AAH06548.1| 397|Homo sapiens elongation factor RNA p... 77 1e-13
AK026290-1|BAB15432.1| 397|Homo sapiens protein ( Homo sapiens ... 77 1e-13
AF276512-1|AAG13463.1| 397|Homo sapiens RNA polymerase II elong... 77 1e-13
DQ682658-1|ABG89106.1| 442|Homo sapiens tricellulin isoform c p... 71 1e-11
DQ682657-1|ABG89105.1| 546|Homo sapiens tricellulin isoform a1 ... 71 1e-11
DQ682656-1|ABG89104.1| 558|Homo sapiens tricellulin isoform a p... 71 1e-11
BC033689-1|AAH33689.1| 558|Homo sapiens MARVEL domain containin... 71 1e-11
AB219936-1|BAE54513.1| 558|Homo sapiens TRIC protein. 71 1e-11
U53823-1|AAB00195.1| 522|Homo sapiens occludin protein. 61 9e-09
U49184-1|AAC50451.1| 522|Homo sapiens occludin protein. 61 9e-09
BC029886-1|AAH29886.1| 522|Homo sapiens OCLN protein protein. 61 9e-09
AF400630-1|AAL47094.1| 522|Homo sapiens occludin protein. 61 9e-09
BC029361-1|AAH29361.1| 264|Homo sapiens occludin/ELL domain con... 54 8e-07
AK026362-1|BAB15460.1| 264|Homo sapiens protein ( Homo sapiens ... 54 8e-07
BC008301-1|AAH08301.1| 390|Homo sapiens tuftelin 1 protein. 35 0.71
BC002933-1|AAH02933.1| 365|Homo sapiens TUFT1 protein protein. 35 0.71
AL365436-4|CAI16591.1| 390|Homo sapiens tuftelin 1 protein. 35 0.71
AL365436-3|CAI16592.1| 365|Homo sapiens tuftelin 1 protein. 35 0.71
AK223161-1|BAD96881.1| 390|Homo sapiens tuftelin 1 variant prot... 35 0.71
AK075001-1|BAC11346.1| 365|Homo sapiens protein ( Homo sapiens ... 35 0.71
AF254860-1|AAF78914.1| 390|Homo sapiens tuftelin 1 protein. 35 0.71
AF254260-1|AAF78913.1| 390|Homo sapiens tuftelin 1 protein. 35 0.71
AJ277892-3|CAD12457.1| 5604|Homo sapiens Novex-3 Titin Isoform p... 32 5.0
AC023270-1|AAX88844.1| 5604|Homo sapiens unknown protein. 32 5.0
M77830-1|AAA85135.1| 2871|Homo sapiens desmoplakin I protein. 31 6.6
J05211-1|AAA35766.1| 1752|Homo sapiens protein ( Human desmoplak... 31 6.6
AL031058-1|CAA19927.1| 2871|Homo sapiens desmoplakin protein. 31 6.6
>U16282-1|AAA57120.1| 621|Homo sapiens ELL protein.
Length = 621
Score = 91.9 bits (218), Expect = 4e-18
Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 269 SVPDEITTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENE 328
SVP T++ + +Y I+SS R++YKN+F Y+EYR+L+AR+ ++ FT+L+ +
Sbjct: 498 SVPTS-TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQ 556
Query: 329 LKRAQPMSPHHQSIEQRIVEEYRRV-SNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
L++ S +++ +I++EYR++ + Y E+ R YL KL H+KR++ +YDQ
Sbjct: 557 LRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQ 614
Score = 66.5 bits (155), Expect = 2e-10
Identities = 29/84 (34%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 102 LTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLM--KDNCYHL 159
+++R ++R++ LLAL+P++K EL RL +G+ ++ A++ +L Q++ M KD L
Sbjct: 202 VSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTL 261
Query: 160 RRHIWNDVNEDWPFYTEEEKRMLK 183
+ ++ DV +DWP Y+E ++++LK
Sbjct: 262 QDCMYKDVQKDWPGYSEGDQQLLK 285
>S77890-2|AAB34056.1| 576|Homo sapiens MEN protein.
Length = 576
Score = 91.9 bits (218), Expect = 4e-18
Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 269 SVPDEITTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENE 328
SVP T++ + +Y I+SS R++YKN+F Y+EYR+L+AR+ ++ FT+L+ +
Sbjct: 453 SVPTS-TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQ 511
Query: 329 LKRAQPMSPHHQSIEQRIVEEYRRV-SNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
L++ S +++ +I++EYR++ + Y E+ R YL KL H+KR++ +YDQ
Sbjct: 512 LRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQ 569
Score = 66.5 bits (155), Expect = 2e-10
Identities = 29/84 (34%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 102 LTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLM--KDNCYHL 159
+++R ++R++ LLAL+P++K EL RL +G+ ++ A++ +L Q++ M KD L
Sbjct: 157 VSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTL 216
Query: 160 RRHIWNDVNEDWPFYTEEEKRMLK 183
+ ++ DV +DWP Y+E ++++LK
Sbjct: 217 QDCMYKDVQKDWPGYSEGDQQLLK 240
>BC049195-1|AAH49195.1| 621|Homo sapiens elongation factor RNA
polymerase II protein.
Length = 621
Score = 91.9 bits (218), Expect = 4e-18
Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 269 SVPDEITTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENE 328
SVP T++ + +Y I+SS R++YKN+F Y+EYR+L+AR+ ++ FT+L+ +
Sbjct: 498 SVPTS-TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQ 556
Query: 329 LKRAQPMSPHHQSIEQRIVEEYRRV-SNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
L++ S +++ +I++EYR++ + Y E+ R YL KL H+KR++ +YDQ
Sbjct: 557 LRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQ 614
Score = 66.5 bits (155), Expect = 2e-10
Identities = 29/84 (34%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 102 LTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLM--KDNCYHL 159
+++R ++R++ LLAL+P++K EL RL +G+ ++ A++ +L Q++ M KD L
Sbjct: 202 VSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTL 261
Query: 160 RRHIWNDVNEDWPFYTEEEKRMLK 183
+ ++ DV +DWP Y+E ++++LK
Sbjct: 262 QDCMYKDVQKDWPGYSEGDQQLLK 285
>AB208794-1|BAD92031.1| 565|Homo sapiens elongation factor RNA
polymerase II variant protein.
Length = 565
Score = 91.9 bits (218), Expect = 4e-18
Identities = 42/118 (35%), Positives = 75/118 (63%), Gaps = 2/118 (1%)
Query: 269 SVPDEITTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENE 328
SVP T++ + +Y I+SS R++YKN+F Y+EYR+L+AR+ ++ FT+L+ +
Sbjct: 442 SVPTS-TSETPDYLLKYAAISSSEQRQSYKNDFNAEYSEYRDLHARIERITRRFTQLDAQ 500
Query: 329 LKRAQPMSPHHQSIEQRIVEEYRRV-SNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
L++ S +++ +I++EYR++ + Y E+ R YL KL H+KR++ +YDQ
Sbjct: 501 LRQLSQGSEEYETTRGQILQEYRKIKKTNTNYSQEKHRCEYLHSKLAHIKRLIAEYDQ 558
Score = 66.5 bits (155), Expect = 2e-10
Identities = 29/84 (34%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 102 LTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLM--KDNCYHL 159
+++R ++R++ LLAL+P++K EL RL +G+ ++ A++ +L Q++ M KD L
Sbjct: 146 VSQRPFRDRVLHLLALRPYRKAELLLRLQKDGLTQADKDALDGLLQQVANMSAKDGTCTL 205
Query: 160 RRHIWNDVNEDWPFYTEEEKRMLK 183
+ ++ DV +DWP Y+E ++++LK
Sbjct: 206 QDCMYKDVQKDWPGYSEGDQQLLK 229
>U88629-1|AAC51232.1| 640|Homo sapiens RNA polymerase II elongation
factor ELL2 protein.
Length = 640
Score = 83.0 bits (196), Expect = 2e-15
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+Y I S R+ YK++F Y EYR L+AR+ VA F +L+ + KR P S +Q++
Sbjct: 531 KYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVH 590
Query: 344 QRIVEEYRRVSNDAA-YQHERRRVNYLDKKLTHLKRMVHQYDQ 385
+ +++EY+++ + Y E+ R YL KL H+KR++ ++DQ
Sbjct: 591 EEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQ 633
Score = 74.5 bits (175), Expect = 7e-13
Identities = 32/85 (37%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 102 LTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLM--KDNCYHL 159
+++R ++R+I LLALK +KKPEL RL +G+ K+++++ IL Q++ + KD Y L
Sbjct: 201 ISQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTL 260
Query: 160 RRHIWNDVNEDWPFYTEEEKRMLKS 184
+ +++ ++ DWP Y+E ++R L+S
Sbjct: 261 KDYVFKELQRDWPGYSEIDRRSLES 285
>BC028412-1|AAH28412.1| 640|Homo sapiens elongation factor, RNA
polymerase II, 2 protein.
Length = 640
Score = 83.0 bits (196), Expect = 2e-15
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+Y I S R+ YK++F Y EYR L+AR+ VA F +L+ + KR P S +Q++
Sbjct: 531 KYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVH 590
Query: 344 QRIVEEYRRVSNDAA-YQHERRRVNYLDKKLTHLKRMVHQYDQ 385
+ +++EY+++ + Y E+ R YL KL H+KR++ ++DQ
Sbjct: 591 EEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQ 633
Score = 74.5 bits (175), Expect = 7e-13
Identities = 32/85 (37%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 102 LTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLM--KDNCYHL 159
+++R ++R+I LLALK +KKPEL RL +G+ K+++++ IL Q++ + KD Y L
Sbjct: 201 ISQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTL 260
Query: 160 RRHIWNDVNEDWPFYTEEEKRMLKS 184
+ +++ ++ DWP Y+E ++R L+S
Sbjct: 261 KDYVFKELQRDWPGYSEIDRRSLES 285
>AB209343-1|BAD92580.1| 519|Homo sapiens elongation factor, RNA
polymerase II, 2 variant protein.
Length = 519
Score = 83.0 bits (196), Expect = 2e-15
Identities = 37/103 (35%), Positives = 63/103 (61%), Gaps = 1/103 (0%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+Y I S R+ YK++F Y EYR L+AR+ VA F +L+ + KR P S +Q++
Sbjct: 410 KYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSPGSKEYQNVH 469
Query: 344 QRIVEEYRRVSNDAA-YQHERRRVNYLDKKLTHLKRMVHQYDQ 385
+ +++EY+++ + Y E+ R YL KL H+KR++ ++DQ
Sbjct: 470 EEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQ 512
Score = 74.5 bits (175), Expect = 7e-13
Identities = 32/85 (37%), Positives = 59/85 (69%), Gaps = 2/85 (2%)
Query: 102 LTRRSLKERLIQLLALKPFKKPELYTRLSSEGIKDKERSAVNKILPQISLM--KDNCYHL 159
+++R ++R+I LLALK +KKPEL RL +G+ K+++++ IL Q++ + KD Y L
Sbjct: 80 ISQRPYRDRVIHLLALKAYKKPELLARLQKDGVNQKDKNSLGAILQQVANLNSKDLSYTL 139
Query: 160 RRHIWNDVNEDWPFYTEEEKRMLKS 184
+ +++ ++ DWP Y+E ++R L+S
Sbjct: 140 KDYVFKELQRDWPGYSEIDRRSLES 164
>BX538289-1|CAD98084.1| 309|Homo sapiens hypothetical protein
protein.
Length = 309
Score = 81.0 bits (191), Expect = 8e-15
Identities = 37/110 (33%), Positives = 65/110 (59%), Gaps = 1/110 (0%)
Query: 277 DLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMS 336
+L + +Y I S R+ YK++F Y EYR L+AR+ VA F +L+ + KR S
Sbjct: 193 ELPDYSIKYIAIVSYEQRQNYKDDFNAEYDEYRALHARMETVARRFIKLDAQRKRLSTGS 252
Query: 337 PHHQSIEQRIVEEYRRVSNDAA-YQHERRRVNYLDKKLTHLKRMVHQYDQ 385
+Q++ + +++EY+++ + Y E+ R YL KL H+KR++ ++DQ
Sbjct: 253 KEYQNVHEEVLQEYQKIKQSSPNYHEEKYRCEYLHNKLAHIKRLIGEFDQ 302
>CR457358-1|CAG33639.1| 397|Homo sapiens ELL3 protein.
Length = 397
Score = 77.4 bits (182), Expect = 1e-13
Identities = 35/110 (31%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 277 DLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMS 336
D+ + +Y I S+ + AY+ +F Y EYR L+ARV + F L E+KR + +
Sbjct: 283 DIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGT 342
Query: 337 PHHQSIEQRIVEEYRRVSND-AAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
P ++ +E +I++EY++ +Y+ E+RR YL +KL+H+K ++ ++++
Sbjct: 343 PEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEE 392
>BC019293-1|AAH19293.1| 397|Homo sapiens elongation factor RNA
polymerase II-like 3 protein.
Length = 397
Score = 77.4 bits (182), Expect = 1e-13
Identities = 35/110 (31%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 277 DLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMS 336
D+ + +Y I S+ + AY+ +F Y EYR L+ARV + F L E+KR + +
Sbjct: 283 DIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGT 342
Query: 337 PHHQSIEQRIVEEYRRVSND-AAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
P ++ +E +I++EY++ +Y+ E+RR YL +KL+H+K ++ ++++
Sbjct: 343 PEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEE 392
>BC006548-1|AAH06548.1| 397|Homo sapiens elongation factor RNA
polymerase II-like 3 protein.
Length = 397
Score = 77.4 bits (182), Expect = 1e-13
Identities = 35/110 (31%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 277 DLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMS 336
D+ + +Y I S+ + AY+ +F Y EYR L+ARV + F L E+KR + +
Sbjct: 283 DIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGT 342
Query: 337 PHHQSIEQRIVEEYRRVSND-AAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
P ++ +E +I++EY++ +Y+ E+RR YL +KL+H+K ++ ++++
Sbjct: 343 PEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEE 392
>AK026290-1|BAB15432.1| 397|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22637 fis, clone HSI06677. ).
Length = 397
Score = 77.4 bits (182), Expect = 1e-13
Identities = 35/110 (31%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 277 DLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMS 336
D+ + +Y I S+ + AY+ +F Y EYR L+ARV + F L E+KR + +
Sbjct: 283 DIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGT 342
Query: 337 PHHQSIEQRIVEEYRRVSND-AAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
P ++ +E +I++EY++ +Y+ E+RR YL +KL+H+K ++ ++++
Sbjct: 343 PEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEE 392
>AF276512-1|AAG13463.1| 397|Homo sapiens RNA polymerase II
elongation factor ELL3 protein.
Length = 397
Score = 77.4 bits (182), Expect = 1e-13
Identities = 35/110 (31%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 277 DLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMS 336
D+ + +Y I S+ + AY+ +F Y EYR L+ARV + F L E+KR + +
Sbjct: 283 DIPDYLLQYRAIHSAEQQHAYEQDFETDYAEYRILHARVGTASQRFIELGAEIKRVRRGT 342
Query: 337 PHHQSIEQRIVEEYRRVSND-AAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
P ++ +E +I++EY++ +Y+ E+RR YL +KL+H+K ++ ++++
Sbjct: 343 PEYKVLEDKIIQEYKKFRKQYPSYREEKRRCEYLHQKLSHIKGLILEFEE 392
>DQ682658-1|ABG89106.1| 442|Homo sapiens tricellulin isoform c
protein.
Length = 442
Score = 70.5 bits (165), Expect = 1e-11
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+YP I + R YK F + ++EY+EL A V V F L+ + R S Q E
Sbjct: 329 KYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRLPHHSESRQEHE 388
Query: 344 Q--RIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
+ RI EE+++ ND + ++ R +YL KL+H+K+ + +YD+++
Sbjct: 389 RISRIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDKVM 434
>DQ682657-1|ABG89105.1| 546|Homo sapiens tricellulin isoform a1
protein.
Length = 546
Score = 70.5 bits (165), Expect = 1e-11
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+YP I + R YK F + ++EY+EL A V V F L+ + R S Q E
Sbjct: 433 KYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRLPHHSESRQEHE 492
Query: 344 Q--RIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
+ RI EE+++ ND + ++ R +YL KL+H+K+ + +YD+++
Sbjct: 493 RISRIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDKVM 538
>DQ682656-1|ABG89104.1| 558|Homo sapiens tricellulin isoform a
protein.
Length = 558
Score = 70.5 bits (165), Expect = 1e-11
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+YP I + R YK F + ++EY+EL A V V F L+ + R S Q E
Sbjct: 445 KYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRLPHHSESRQEHE 504
Query: 344 Q--RIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
+ RI EE+++ ND + ++ R +YL KL+H+K+ + +YD+++
Sbjct: 505 RISRIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDKVM 550
>BC033689-1|AAH33689.1| 558|Homo sapiens MARVEL domain containing 2
protein.
Length = 558
Score = 70.5 bits (165), Expect = 1e-11
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+YP I + R YK F + ++EY+EL A V V F L+ + R S Q E
Sbjct: 445 KYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRLPHHSESRQEHE 504
Query: 344 Q--RIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
+ RI EE+++ ND + ++ R +YL KL+H+K+ + +YD+++
Sbjct: 505 RISRIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDKVM 550
>AB219936-1|BAE54513.1| 558|Homo sapiens TRIC protein.
Length = 558
Score = 70.5 bits (165), Expect = 1e-11
Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 2/106 (1%)
Query: 284 RYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIE 343
+YP I + R YK F + ++EY+EL A V V F L+ + R S Q E
Sbjct: 445 KYPVIQTDDERERYKAVFQDQFSEYKELSAEVQAVLRKFDELDAVMSRLPHHSESRQEHE 504
Query: 344 Q--RIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
+ RI EE+++ ND + ++ R +YL KL+H+K+ + +YD+++
Sbjct: 505 RISRIHEEFKKKKNDPTFLEKKERCDYLKNKLSHIKQRIQEYDKVM 550
>U53823-1|AAB00195.1| 522|Homo sapiens occludin protein.
Length = 522
Score = 60.9 bits (141), Expect = 9e-09
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 279 DEIE----RRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP 334
DE+E R YPPITS R+ YK F EY+ L + + ++ +RL+ EL +
Sbjct: 410 DELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYRE 469
Query: 335 MSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
S + + ++V A Y+ ++ L KL+H+K+MV YD+
Sbjct: 470 ESEEYMAAADE-YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDR 519
>U49184-1|AAC50451.1| 522|Homo sapiens occludin protein.
Length = 522
Score = 60.9 bits (141), Expect = 9e-09
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 279 DEIE----RRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP 334
DE+E R YPPITS R+ YK F EY+ L + + ++ +RL+ EL +
Sbjct: 410 DELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYRE 469
Query: 335 MSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
S + + ++V A Y+ ++ L KL+H+K+MV YD+
Sbjct: 470 ESEEYMAAADE-YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDR 519
>BC029886-1|AAH29886.1| 522|Homo sapiens OCLN protein protein.
Length = 522
Score = 60.9 bits (141), Expect = 9e-09
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 279 DEIE----RRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP 334
DE+E R YPPITS R+ YK F EY+ L + + ++ +RL+ EL +
Sbjct: 410 DELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYRE 469
Query: 335 MSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
S + + ++V A Y+ ++ L KL+H+K+MV YD+
Sbjct: 470 ESEEYMAAADE-YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDR 519
>AF400630-1|AAL47094.1| 522|Homo sapiens occludin protein.
Length = 522
Score = 60.9 bits (141), Expect = 9e-09
Identities = 34/111 (30%), Positives = 55/111 (49%), Gaps = 5/111 (4%)
Query: 279 DEIE----RRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP 334
DE+E R YPPITS R+ YK F EY+ L + + ++ +RL+ EL +
Sbjct: 410 DELEEDWIREYPPITSDQQRQLYKRNFDTGLQEYKSLQSELDEINKELSRLDKELDDYRE 469
Query: 335 MSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQ 385
S + + ++V A Y+ ++ L KL+H+K+MV YD+
Sbjct: 470 ESEEYMAAADE-YNRLKQVKGSADYKSKKNHCKQLKSKLSHIKKMVGDYDR 519
>BC029361-1|AAH29361.1| 264|Homo sapiens occludin/ELL domain
containing 1 protein.
Length = 264
Score = 54.4 bits (125), Expect = 8e-07
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 280 EIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP-MSPH 338
+ E +YPP++S R Y F + Y E+ EL V A +LE L P S
Sbjct: 148 DYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLPPPQSQK 207
Query: 339 HQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYD 384
+ R+ E+ D + ++ R +YL KL HLK + ++D
Sbjct: 208 EAQVAARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFD 253
>AK026362-1|BAB15460.1| 264|Homo sapiens protein ( Homo sapiens
cDNA: FLJ22709 fis, clone HSI13338. ).
Length = 264
Score = 54.4 bits (125), Expect = 8e-07
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 280 EIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP-MSPH 338
+ E +YPP++S R Y F + Y E+ EL V A +LE L P S
Sbjct: 148 DYELKYPPVSSERERSRYVAVFQDQYGEFLELQHEVGCAQAKLRQLEALLSSLPPPQSQK 207
Query: 339 HQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYD 384
+ R+ E+ D + ++ R +YL KL HLK + ++D
Sbjct: 208 EAQVAARVWREFEMKRMDPGFLDKQARCHYLKGKLRHLKTQIQKFD 253
>BC008301-1|AAH08301.1| 390|Homo sapiens tuftelin 1 protein.
Length = 390
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 143 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 200
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 201 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 259
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 260 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 295
>BC002933-1|AAH02933.1| 365|Homo sapiens TUFT1 protein protein.
Length = 365
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 118 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 175
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 176 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 234
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 235 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 270
>AL365436-4|CAI16591.1| 390|Homo sapiens tuftelin 1 protein.
Length = 390
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 143 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 200
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 201 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 259
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 260 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 295
>AL365436-3|CAI16592.1| 365|Homo sapiens tuftelin 1 protein.
Length = 365
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 118 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 175
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 176 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 234
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 235 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 270
>AK223161-1|BAD96881.1| 390|Homo sapiens tuftelin 1 variant
protein.
Length = 390
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 143 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 200
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 201 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 259
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 260 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 295
>AK075001-1|BAC11346.1| 365|Homo sapiens protein ( Homo sapiens
cDNA FLJ90520 fis, clone NT2RP3004640, highly similar to
Bos taurus tuftelin mRNA. ).
Length = 365
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 118 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 175
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 176 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 234
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 235 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 270
>AF254860-1|AAF78914.1| 390|Homo sapiens tuftelin 1 protein.
Length = 390
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 143 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 200
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 201 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 259
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 260 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 295
>AF254260-1|AAF78913.1| 390|Homo sapiens tuftelin 1 protein.
Length = 390
Score = 34.7 bits (76), Expect = 0.71
Identities = 38/158 (24%), Positives = 63/158 (39%), Gaps = 11/158 (6%)
Query: 236 KPNGFRSSPPVEQTNITEKDIXXXXXXXXXXXXSVPDEITTDLDEIERRYPP------IT 289
KPNGF SP ++ E D ++ L E +R++ +T
Sbjct: 143 KPNGFSQSPTALYSSPPEVD--TCINEDVESLRKTVQDLLAKLQEAKRQHQSDCVAFEVT 200
Query: 290 SSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEE 349
S +R + L E + + A+V L RL Q + + E + EE
Sbjct: 201 LSRYQREAEQSNVALQREEDRVEQKEAEVGELQRRLLGMETEHQALLAKVREGEVAL-EE 259
Query: 350 YRRVSNDAAYQHERRRVNYLDKKLTHLKRMVHQYDQLI 387
R SN+A Q ER + L+K++ L+ +H D ++
Sbjct: 260 LR--SNNADCQAEREKAATLEKEVAGLREKIHHLDDML 295
>AJ277892-3|CAD12457.1| 5604|Homo sapiens Novex-3 Titin Isoform
protein.
Length = 5604
Score = 31.9 bits (69), Expect = 5.0
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 297 YKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSND 356
Y+ E AE Y E Y VA A L P S H+ IEQ I E + + ++
Sbjct: 3399 YQLEIAEAYPEDEGTYTFVASNAVGQVSSTANLSLEAPESILHERIEQEIEMEMKELFSE 3458
Query: 357 AAYQHERR 364
+H R
Sbjct: 3459 GESEHSER 3466
>AC023270-1|AAX88844.1| 5604|Homo sapiens unknown protein.
Length = 5604
Score = 31.9 bits (69), Expect = 5.0
Identities = 21/68 (30%), Positives = 28/68 (41%)
Query: 297 YKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQPMSPHHQSIEQRIVEEYRRVSND 356
Y+ E AE Y E Y VA A L P S H+ IEQ I E + + ++
Sbjct: 3399 YQLEIAEAYPEDEGTYTFVASNAVGQVSSTANLSLEAPESILHERIEQEIEMEMKELFSE 3458
Query: 357 AAYQHERR 364
+H R
Sbjct: 3459 GESEHSER 3466
>M77830-1|AAA85135.1| 2871|Homo sapiens desmoplakin I protein.
Length = 2871
Score = 31.5 bits (68), Expect = 6.6
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 275 TTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP 334
T D +R+ GMRR+ K + ++ L ++ Q + + R E++L++ +
Sbjct: 1583 TASEDSCKRKKLEEELEGMRRSLKEQAIKI----TNLTQQLEQASIVKKRSEDDLRQQRD 1638
Query: 335 MSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLK 377
+ H +QR EE RR+S++ + K HL+
Sbjct: 1639 VLDGHLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLR 1681
>J05211-1|AAA35766.1| 1752|Homo sapiens protein ( Human desmoplakin
mRNA, 3' end. ).
Length = 1752
Score = 31.5 bits (68), Expect = 6.6
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 275 TTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP 334
T D +R+ GMRR+ K + ++ L ++ Q + + R E++L++ +
Sbjct: 464 TASEDSCKRKKLEEELEGMRRSLKEQAIKI----TNLTQQLEQASIVKKRSEDDLRQQRD 519
Query: 335 MSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLK 377
+ H +QR EE RR+S++ + K HL+
Sbjct: 520 VLDGHLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLR 562
>AL031058-1|CAA19927.1| 2871|Homo sapiens desmoplakin protein.
Length = 2871
Score = 31.5 bits (68), Expect = 6.6
Identities = 24/103 (23%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 275 TTDLDEIERRYPPITSSGMRRAYKNEFAELYTEYRELYARVAQVAALFTRLENELKRAQP 334
T D +R+ GMRR+ K + ++ L ++ Q + + R E++L++ +
Sbjct: 1583 TASEDSCKRKKLEEELEGMRRSLKEQAIKI----TNLTQQLEQASIVKKRSEDDLRQQRD 1638
Query: 335 MSPHHQSIEQRIVEEYRRVSNDAAYQHERRRVNYLDKKLTHLK 377
+ H +QR EE RR+S++ + K HL+
Sbjct: 1639 VLDGHLREKQRTQEELRRLSSEVEALRRQLLQEQESVKQAHLR 1681
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,976,365
Number of Sequences: 224733
Number of extensions: 2063783
Number of successful extensions: 8359
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 8281
Number of HSP's gapped (non-prelim): 50
length of query: 472
length of database: 73,234,838
effective HSP length: 93
effective length of query: 379
effective length of database: 52,334,669
effective search space: 19834839551
effective search space used: 19834839551
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 67 (31.1 bits)
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